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The map label for this gene is lsrB [H]

Identifier: 110680270

GI number: 110680270

Start: 2952252

End: 2953244

Strand: Reverse

Name: lsrB [H]

Synonym: RD1_3080

Alternate gene names: 110680270

Gene position: 2953244-2952252 (Counterclockwise)

Preceding gene: 110680271

Following gene: 110680269

Centisome position: 71.45

GC content: 58.41

Gene sequence:

>993_bases
ATGAGTGTACTTAAGAAACTAGCAGCATCCGTTGCATTGGCAGGAACGATGGTCGCAAGCCCCGCGCTGGCAGAGGACGT
GCGCATCGCGCTGGTCGTCAAGGCGCTGGGTATCGGCTTTTTCGAAGCGGCTGCGGAAGGTGCGCAGGAGGCTGCGGAAG
AACTTGGCAATGTCGAAATCATCTACACAGGGCCCACTGACACGACCGCCGAAGGGCAGATCGAAGTCATCAATTCGCTC
ATTGCCCAGCAGGTCGACGCCATTGCCGTGTCTTCAAATGACACGGACGCTTTGGTGCCCGCCCTTCAGCGCGCGATGCA
GCGCGGGATCACGGTGATCAGCTGGGATTCCGGTGTGGCGCCAGAGGGGCGTCAGTTGCATCTCAACCCATCGTCCAACG
CGCTGATTGGCAATATGATCATCAAACTGGCTGCGGATCATTTGCCAGAGGGCGGCGAGGTTGCCTTGCTCTCTGCGACC
ACAACATCCACCAACCAGAACATCTGGATGGAGGAGATGAACAAGGTGATGGGCAACTATCCGGATATCGAAGTTGTCGC
GACGGTATACGGGGATGATCTTGCCGATAAATCCTACCGCGAGGCGACCGGCCTGATGCAATCCTATCCGGATCTGGACG
CCATCATCGCGCCGACATCCGTCGGGATCGTGGCTGCGGCGCAAGCCGTTGTGGATGCGGGCAAGGTCGGTCAGGTGAAT
GTCACGGGCCTTGGCCTGCCATCCGAAATGGCCGGCGCGATTGAATCGGGTGCCTCGCAATCTTTCGCCATTTGGAACCC
GATTGATCTGGGGTATTCCGCGACCATGCTTGCCTATGAACTCAGCCAGAACGGCGTTGAGGCCGCGCCCGGTGCCGAAA
TCCCCATGGGGCGCATGGGCAGCCTGACGCTTGATGAAAACAACGAAGGCGCCATGGCCGATCCCTTCGTCTATGACGCC
AGCAACATCGAGCAGTTCAAGTCGATTTTCTAA

Upstream 100 bases:

>100_bases
CGCGGCGGATGTCACATTGATCGTTGTTCCGTCCGGGATCGCGCAGAAAGACGGTGTGGCGCAGTTGCCCGCCTGATGTA
ACCACTCCAGGGAGGAAACC

Downstream 100 bases:

>100_bases
TTTGCGCCGGACCAGCCCCTTTTATCAACGCCCCCAAAAGAGTGTCGTCATGTCAAAGCACACCCTATCTGCAGATGTGC
CCGTGGTATCCATGGATGCC

Product: sugar ABC transporter, ATP binding protein, putative

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MSVLKKLAASVALAGTMVASPALAEDVRIALVVKALGIGFFEAAAEGAQEAAEELGNVEIIYTGPTDTTAEGQIEVINSL
IAQQVDAIAVSSNDTDALVPALQRAMQRGITVISWDSGVAPEGRQLHLNPSSNALIGNMIIKLAADHLPEGGEVALLSAT
TTSTNQNIWMEEMNKVMGNYPDIEVVATVYGDDLADKSYREATGLMQSYPDLDAIIAPTSVGIVAAAQAVVDAGKVGQVN
VTGLGLPSEMAGAIESGASQSFAIWNPIDLGYSATMLAYELSQNGVEAAPGAEIPMGRMGSLTLDENNEGAMADPFVYDA
SNIEQFKSIF

Sequences:

>Translated_330_residues
MSVLKKLAASVALAGTMVASPALAEDVRIALVVKALGIGFFEAAAEGAQEAAEELGNVEIIYTGPTDTTAEGQIEVINSL
IAQQVDAIAVSSNDTDALVPALQRAMQRGITVISWDSGVAPEGRQLHLNPSSNALIGNMIIKLAADHLPEGGEVALLSAT
TTSTNQNIWMEEMNKVMGNYPDIEVVATVYGDDLADKSYREATGLMQSYPDLDAIIAPTSVGIVAAAQAVVDAGKVGQVN
VTGLGLPSEMAGAIESGASQSFAIWNPIDLGYSATMLAYELSQNGVEAAPGAEIPMGRMGSLTLDENNEGAMADPFVYDA
SNIEQFKSIF
>Mature_329_residues
SVLKKLAASVALAGTMVASPALAEDVRIALVVKALGIGFFEAAAEGAQEAAEELGNVEIIYTGPTDTTAEGQIEVINSLI
AQQVDAIAVSSNDTDALVPALQRAMQRGITVISWDSGVAPEGRQLHLNPSSNALIGNMIIKLAADHLPEGGEVALLSATT
TSTNQNIWMEEMNKVMGNYPDIEVVATVYGDDLADKSYREATGLMQSYPDLDAIIAPTSVGIVAAAQAVVDAGKVGQVNV
TGLGLPSEMAGAIESGASQSFAIWNPIDLGYSATMLAYELSQNGVEAAPGAEIPMGRMGSLTLDENNEGAMADPFVYDAS
NIEQFKSIF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=287, Percent_Identity=36.5853658536585, Blast_Score=177, Evalue=7e-46,
Organism=Escherichia coli, GI1790526, Length=281, Percent_Identity=25.2669039145907, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34322; Mature: 34191

Theoretical pI: Translated: 3.82; Mature: 3.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVLKKLAASVALAGTMVASPALAEDVRIALVVKALGIGFFEAAAEGAQEAAEELGNVEI
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCEEE
IYTGPTDTTAEGQIEVINSLIAQQVDAIAVSSNDTDALVPALQRAMQRGITVISWDSGVA
EEECCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCC
PEGRQLHLNPSSNALIGNMIIKLAADHLPEGGEVALLSATTTSTNQNIWMEEMNKVMGNY
CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCC
PDIEVVATVYGDDLADKSYREATGLMQSYPDLDAIIAPTSVGIVAAAQAVVDAGKVGQVN
CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCCCCEEE
VTGLGLPSEMAGAIESGASQSFAIWNPIDLGYSATMLAYELSQNGVEAAPGAEIPMGRMG
EEECCCCHHHHHHHHCCCCCCEEEECCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCC
SLTLDENNEGAMADPFVYDASNIEQFKSIF
EEEECCCCCCCCCCCEEECCCCHHHHHHCC
>Mature Secondary Structure 
SVLKKLAASVALAGTMVASPALAEDVRIALVVKALGIGFFEAAAEGAQEAAEELGNVEI
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCEEE
IYTGPTDTTAEGQIEVINSLIAQQVDAIAVSSNDTDALVPALQRAMQRGITVISWDSGVA
EEECCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCC
PEGRQLHLNPSSNALIGNMIIKLAADHLPEGGEVALLSATTTSTNQNIWMEEMNKVMGNY
CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCC
PDIEVVATVYGDDLADKSYREATGLMQSYPDLDAIIAPTSVGIVAAAQAVVDAGKVGQVN
CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCCCCEEE
VTGLGLPSEMAGAIESGASQSFAIWNPIDLGYSATMLAYELSQNGVEAAPGAEIPMGRMG
EEECCCCHHHHHHHHCCCCCCEEEECCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCC
SLTLDENNEGAMADPFVYDASNIEQFKSIF
EEEECCCCCCCCCCCEEECCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA