| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is yceG [C]
Identifier: 110680227
GI number: 110680227
Start: 2905890
End: 2907056
Strand: Reverse
Name: yceG [C]
Synonym: RD1_3035
Alternate gene names: 110680227
Gene position: 2907056-2905890 (Counterclockwise)
Preceding gene: 110680228
Following gene: 110680226
Centisome position: 70.34
GC content: 61.35
Gene sequence:
>1167_bases ATGTGGCGGCATATCGCTTCTAATGCAGTGACGATGTTGATTGTGCTGCTGTTTCTGGTGGGCGGCGTCATTCTGTGGGG CAAATCCCAATACGATGGTGCGGGCCCACTGAGCGAAGCGATGTGTGTGGAAGTGCCCAGTGGCTCAACGATGCGCCGCA TAAGCGAGACGCTGGAAGACAGCGGAGCCGTGACGTCCAGCGCGATTTTCCGGATGGGCGCGGAATACGCCGATAAAGCC GACCAGTTGAAGGCGGGCAGCTATCTGGTGCCCCCCGGTGCGTCCATGGCGCAGATCGTGGATACCGTGACCCGGGGCGG GGCGAGCACCTGCGGAACGGAAGTCGTGTATCGCATAGGCGTAAATCGCGTGAGTGTTCAGTTGCGCGAGTTGAACCCGC AAACCAATCAGTTCGAAGAAATGGCGAATTTCAATCCCGCCGTGGATGAGACGCCTGACATCTATACAGACCGCAAGGCA TCTGTGGGGACGCGGTTTCGTGTGGCGCTCGCGGAAGGTGTGACGTCCTGGCAGATCGTTGAGGGGCTGAAGGCGATGGA TGTGCTGGAGGGGAGTGTCGAGGCGCTGCCGCCTGAAGGGTCGCTGGCACCCGACAGCTATGAGGTGCGCCCGGGCGATC AGCGCGCAAATGTGGTGGAACGCATGCGCGCCGCACAGGAACGGCGTGTGGCGCGCGTCTGGGAAAACCGGCAGCCGGGT TTGCCGATCGAGACACCGGAAGAATTGTTGATCCTTGCGTCGATTATTGAAAAGGAAACGGCCGTTGCCGAAGAGCGTCG GCAGGTGGCGAGCGTCTTTGTGAACCGTCTGAACCGTGGCATGCGTCTGCAGACCGACCCCACCGTGATTTATGGTGTGA CCGAAGGGAGAGGCGTGCTGGGACGCGGGTTGCGCCAGAGTGAACTGCGCGCCGCCACCCCGTGGAACACCTATGTGATC GAGGGGCTGCCGCCGACGCCGATCGCCAATCCGGGTCTTGCAAGTCTGGAAGCGGCAGCGGCGCCGCTGGAGACGCCCTA TATCTTTTTCGTAGCGGACGGGACGGGCGGTCACGCCTTTGCCGAAACGCTTGCGGAGCATAACCGAAACGTCGCACAAT GGCGCCGGATCGAAGCGGAACGGGCCAATCAGAGTTCTGGCAACTAG
Upstream 100 bases:
>100_bases CGCCCAATGCCAAGCGCCCGCGTGAAATCAACGTCGCCCTCAGCAACTCATTCGGGTTTGGGGGCACGAATGCGAGTGTT CTGTTCGGGAAGACCGACTG
Downstream 100 bases:
>100_bases GGCCATCATTCCGGCGCTTTATCGGGGCATGGGACAGCATGTTTTGGCGCAGACCCGCAGTGTTTGCGCAGTCCTGCAGG GGTCAAAGGTTAACGGCACC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 388; Mature: 388
Protein sequence:
>388_residues MWRHIASNAVTMLIVLLFLVGGVILWGKSQYDGAGPLSEAMCVEVPSGSTMRRISETLEDSGAVTSSAIFRMGAEYADKA DQLKAGSYLVPPGASMAQIVDTVTRGGASTCGTEVVYRIGVNRVSVQLRELNPQTNQFEEMANFNPAVDETPDIYTDRKA SVGTRFRVALAEGVTSWQIVEGLKAMDVLEGSVEALPPEGSLAPDSYEVRPGDQRANVVERMRAAQERRVARVWENRQPG LPIETPEELLILASIIEKETAVAEERRQVASVFVNRLNRGMRLQTDPTVIYGVTEGRGVLGRGLRQSELRAATPWNTYVI EGLPPTPIANPGLASLEAAAAPLETPYIFFVADGTGGHAFAETLAEHNRNVAQWRRIEAERANQSSGN
Sequences:
>Translated_388_residues MWRHIASNAVTMLIVLLFLVGGVILWGKSQYDGAGPLSEAMCVEVPSGSTMRRISETLEDSGAVTSSAIFRMGAEYADKA DQLKAGSYLVPPGASMAQIVDTVTRGGASTCGTEVVYRIGVNRVSVQLRELNPQTNQFEEMANFNPAVDETPDIYTDRKA SVGTRFRVALAEGVTSWQIVEGLKAMDVLEGSVEALPPEGSLAPDSYEVRPGDQRANVVERMRAAQERRVARVWENRQPG LPIETPEELLILASIIEKETAVAEERRQVASVFVNRLNRGMRLQTDPTVIYGVTEGRGVLGRGLRQSELRAATPWNTYVI EGLPPTPIANPGLASLEAAAAPLETPYIFFVADGTGGHAFAETLAEHNRNVAQWRRIEAERANQSSGN >Mature_388_residues MWRHIASNAVTMLIVLLFLVGGVILWGKSQYDGAGPLSEAMCVEVPSGSTMRRISETLEDSGAVTSSAIFRMGAEYADKA DQLKAGSYLVPPGASMAQIVDTVTRGGASTCGTEVVYRIGVNRVSVQLRELNPQTNQFEEMANFNPAVDETPDIYTDRKA SVGTRFRVALAEGVTSWQIVEGLKAMDVLEGSVEALPPEGSLAPDSYEVRPGDQRANVVERMRAAQERRVARVWENRQPG LPIETPEELLILASIIEKETAVAEERRQVASVFVNRLNRGMRLQTDPTVIYGVTEGRGVLGRGLRQSELRAATPWNTYVI EGLPPTPIANPGLASLEAAAAPLETPYIFFVADGTGGHAFAETLAEHNRNVAQWRRIEAERANQSSGN
Specific function: Unknown
COG id: COG1559
COG function: function code R; Predicted periplasmic solute-binding protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0755 family [H]
Homologues:
Organism=Escherichia coli, GI1787339, Length=187, Percent_Identity=48.1283422459893, Blast_Score=171, Evalue=9e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003770 [H]
Pfam domain/function: PF02618 ADC_lyase [H]
EC number: NA
Molecular weight: Translated: 42151; Mature: 42151
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWRHIASNAVTMLIVLLFLVGGVILWGKSQYDGAGPLSEAMCVEVPSGSTMRRISETLED CCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH SGAVTSSAIFRMGAEYADKADQLKAGSYLVPPGASMAQIVDTVTRGGASTCGTEVVYRIG CCCHHHHHHHHHCHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHC VNRVSVQLRELNPQTNQFEEMANFNPAVDETPDIYTDRKASVGTRFRVALAEGVTSWQIV CCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCCHHHHH EGLKAMDVLEGSVEALPPEGSLAPDSYEVRPGDQRANVVERMRAAQERRVARVWENRQPG HHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC LPIETPEELLILASIIEKETAVAEERRQVASVFVNRLNRGMRLQTDPTVIYGVTEGRGVL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEECCCCCHH GRGLRQSELRAATPWNTYVIEGLPPTPIANPGLASLEAAAAPLETPYIFFVADGTGGHAF HCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHH AETLAEHNRNVAQWRRIEAERANQSSGN HHHHHHHCCCHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MWRHIASNAVTMLIVLLFLVGGVILWGKSQYDGAGPLSEAMCVEVPSGSTMRRISETLED CCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH SGAVTSSAIFRMGAEYADKADQLKAGSYLVPPGASMAQIVDTVTRGGASTCGTEVVYRIG CCCHHHHHHHHHCHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHC VNRVSVQLRELNPQTNQFEEMANFNPAVDETPDIYTDRKASVGTRFRVALAEGVTSWQIV CCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCCHHHHH EGLKAMDVLEGSVEALPPEGSLAPDSYEVRPGDQRANVVERMRAAQERRVARVWENRQPG HHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC LPIETPEELLILASIIEKETAVAEERRQVASVFVNRLNRGMRLQTDPTVIYGVTEGRGVL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEECCCCCHH GRGLRQSELRAATPWNTYVIEGLPPTPIANPGLASLEAAAAPLETPYIFFVADGTGGHAF HCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHH AETLAEHNRNVAQWRRIEAERANQSSGN HHHHHHHCCCHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]