Click here to switch to the map view.

The map label for this gene is 110680214

Identifier: 110680214

GI number: 110680214

Start: 2896859

End: 2897491

Strand: Reverse

Name: 110680214

Synonym: RD1_3019

Alternate gene names: NA

Gene position: 2897491-2896859 (Counterclockwise)

Preceding gene: 110680215

Following gene: 110680213

Centisome position: 70.1

GC content: 55.92

Gene sequence:

>633_bases
ATGCAATTTCATGATGTCAGATTTCCGGCAAAACTGAGCTTTGGCTCCGTTGGCGGACCCGAGCGGCGCACAGACGTTGT
CGCGATTTCAAACGGCTTTGAAGAGCGCAACGCGCCCTGGGCCCATTCGCGCCGCCGCTATGATGCCGGTGTAGGTATCC
GGTCGCTCGATGATGTGGATGTTATGATTGCGTTTTTCGAAGCCCGGTTTGGACAGCTCTATGCCTTTCGCTGGAAAGAC
TGGTCAGACTATCGATCCTGCAAGCCATCCGTGGATATCACGGCATTTGATCAACACCTTGGTGAGGGGGACGGCGACCA
AGTCGCGTTTCAGATTACGAAAACCTACCAGTCGGGGAACCACAGCTACGTCAGGCCGATCTCGAAACCGGTCATTTCAA
CCCTGAGGGTGGCGGTTGGAGCCGTTGAGGTGCAGGAGGGTGTCGATTACGTCGTGGACGCGGCAACCGGCGTGATCAAT
TTTACGGTGGCACCGCAAACAGGCGCATCCGTCACGGCGGGATTTGAGTTTGATGTGCCCGTGCGATTTGACACCAGTAG
CATTCAGACCAGCGTGGCGAGCTTTCAGGCCGGCGAAATACCGACTGTTCCCATTATCGAGGTGCGTTTGTGA

Upstream 100 bases:

>100_bases
ATGTTCAGAATTTCCAGAGATCTCAGGCGCAGATCGCGGCACAGATGAGTCGTGCTCTGGGACGTGGTCAGCGCAACCGG
TAACTTGAAGGGACCAAGAA

Downstream 100 bases:

>100_bases
TGACGGGTATGAATGAAGGTTTGAAAGCGCATCTGGCAACGGGTCTGACCACCTTGGCGCATGCCTGGGCCATAGAGCGC
ACGGATGGCGTGATTCTGGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MQFHDVRFPAKLSFGSVGGPERRTDVVAISNGFEERNAPWAHSRRRYDAGVGIRSLDDVDVMIAFFEARFGQLYAFRWKD
WSDYRSCKPSVDITAFDQHLGEGDGDQVAFQITKTYQSGNHSYVRPISKPVISTLRVAVGAVEVQEGVDYVVDAATGVIN
FTVAPQTGASVTAGFEFDVPVRFDTSSIQTSVASFQAGEIPTVPIIEVRL

Sequences:

>Translated_210_residues
MQFHDVRFPAKLSFGSVGGPERRTDVVAISNGFEERNAPWAHSRRRYDAGVGIRSLDDVDVMIAFFEARFGQLYAFRWKD
WSDYRSCKPSVDITAFDQHLGEGDGDQVAFQITKTYQSGNHSYVRPISKPVISTLRVAVGAVEVQEGVDYVVDAATGVIN
FTVAPQTGASVTAGFEFDVPVRFDTSSIQTSVASFQAGEIPTVPIIEVRL
>Mature_210_residues
MQFHDVRFPAKLSFGSVGGPERRTDVVAISNGFEERNAPWAHSRRRYDAGVGIRSLDDVDVMIAFFEARFGQLYAFRWKD
WSDYRSCKPSVDITAFDQHLGEGDGDQVAFQITKTYQSGNHSYVRPISKPVISTLRVAVGAVEVQEGVDYVVDAATGVIN
FTVAPQTGASVTAGFEFDVPVRFDTSSIQTSVASFQAGEIPTVPIIEVRL

Specific function: Unknown

COG id: COG5448

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23131; Mature: 23131

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFHDVRFPAKLSFGSVGGPERRTDVVAISNGFEERNAPWAHSRRRYDAGVGIRSLDDVD
CCCCCCCCCCEECCCCCCCCCCCCEEEEEECCCCCCCCCCCHHCCCHHCCCCCCCCCCHH
VMIAFFEARFGQLYAFRWKDWSDYRSCKPSVDITAFDQHLGEGDGDQVAFQITKTYQSGN
HHHHHHHHHCCEEEEEEECCCHHHHCCCCCCCEEEHHHHCCCCCCCEEEEEEEEEEECCC
HSYVRPISKPVISTLRVAVGAVEVQEGVDYVVDAATGVINFTVAPQTGASVTAGFEFDVP
CCEECCHHHHHHHHHHHHHHHEEHHHCCCEEEECCCCEEEEEECCCCCCEEEECEEECCE
VRFDTSSIQTSVASFQAGEIPTVPIIEVRL
EEECCHHHHHHHHHCCCCCCCCCCEEEEEC
>Mature Secondary Structure
MQFHDVRFPAKLSFGSVGGPERRTDVVAISNGFEERNAPWAHSRRRYDAGVGIRSLDDVD
CCCCCCCCCCEECCCCCCCCCCCCEEEEEECCCCCCCCCCCHHCCCHHCCCCCCCCCCHH
VMIAFFEARFGQLYAFRWKDWSDYRSCKPSVDITAFDQHLGEGDGDQVAFQITKTYQSGN
HHHHHHHHHCCEEEEEEECCCHHHHCCCCCCCEEEHHHHCCCCCCCEEEEEEEEEEECCC
HSYVRPISKPVISTLRVAVGAVEVQEGVDYVVDAATGVINFTVAPQTGASVTAGFEFDVP
CCEECCHHHHHHHHHHHHHHHEEHHHCCCEEEECCCCEEEEEECCCCCCEEEECEEECCE
VRFDTSSIQTSVASFQAGEIPTVPIIEVRL
EEECCHHHHHHHHHCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA