Click here to switch to the map view.

The map label for this gene is infC [H]

Identifier: 110680169

GI number: 110680169

Start: 2847148

End: 2847642

Strand: Direct

Name: infC [H]

Synonym: RD1_2970

Alternate gene names: 110680169

Gene position: 2847148-2847642 (Clockwise)

Preceding gene: 110680168

Following gene: 110680170

Centisome position: 68.89

GC content: 54.55

Gene sequence:

>495_bases
GTGAACGAGAAAATCCGAGGGTCAGATATCAGACTGATCGGCGCTGAAGGCGAGAACGTCGGCGTTGTGTCACCCGAACG
CGCCATGGAAATGGCGATGGATGCCGGGCTGGATCTGGTTGAAATTTCGCCGAACGCCAACCCTCCGGTGTGCAAGATCA
TGGATTTTGGCAAGTTCAAATACGAACAGCAAAAACGTGAGAGCGAAGCCCGGAAAAAGCAGAAGATCATCGAGATCAAA
GAGGTCAAGTTCCGGCCAAATACCGATACGAACGACTATGACGTCAAGATGCGCAATGTTTTCCGGTTCCTCGAAAACGG
CGACAAGGTGAAAATCACATTGCGGTTCCGCGGGCGCGAAATGGCGCACCAGAACCTCGGTCGTGAGTTGCTGGAGCGGG
TCGCAGAAGACACCAAGGAAGCCGGGCGCGTCGAAAACTTCCCCAAGATGGAAGGCCGCCAGATGGTGATGTTGATCGGG
CCGCTTCCAAGGTAG

Upstream 100 bases:

>100_bases
CGTTTAATTTACGCACGCAGTTTTGTTGAACAATTGAAGGAAGAACATCATCGCTCGCAGACCACACAACGCGCCGCCGC
AACGGGAAACCGGGCCACGC

Downstream 100 bases:

>100_bases
GCAGTTTTCCGACATTAAACCGATACCATCAAACGCGTTTGCCGGTTGCAAGCGCGTTTTTTCTTTGCGGAATGGTCCTA
TGCAGATACTGCATACCCCG

Product: translation initiation factor IF-3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MNEKIRGSDIRLIGAEGENVGVVSPERAMEMAMDAGLDLVEISPNANPPVCKIMDFGKFKYEQQKRESEARKKQKIIEIK
EVKFRPNTDTNDYDVKMRNVFRFLENGDKVKITLRFRGREMAHQNLGRELLERVAEDTKEAGRVENFPKMEGRQMVMLIG
PLPR

Sequences:

>Translated_164_residues
MNEKIRGSDIRLIGAEGENVGVVSPERAMEMAMDAGLDLVEISPNANPPVCKIMDFGKFKYEQQKRESEARKKQKIIEIK
EVKFRPNTDTNDYDVKMRNVFRFLENGDKVKITLRFRGREMAHQNLGRELLERVAEDTKEAGRVENFPKMEGRQMVMLIG
PLPR
>Mature_164_residues
MNEKIRGSDIRLIGAEGENVGVVSPERAMEMAMDAGLDLVEISPNANPPVCKIMDFGKFKYEQQKRESEARKKQKIIEIK
EVKFRPNTDTNDYDVKMRNVFRFLENGDKVKITLRFRGREMAHQNLGRELLERVAEDTKEAGRVENFPKMEGRQMVMLIG
PLPR

Specific function: IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins [H]

COG id: COG0290

COG function: function code J; Translation initiation factor 3 (IF-3)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IF-3 family [H]

Homologues:

Organism=Escherichia coli, GI1788012, Length=162, Percent_Identity=60.4938271604938, Blast_Score=193, Evalue=5e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019813
- InterPro:   IPR001288
- InterPro:   IPR019815
- InterPro:   IPR019814 [H]

Pfam domain/function: PF00707 IF3_C; PF05198 IF3_N [H]

EC number: NA

Molecular weight: Translated: 18926; Mature: 18926

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS00938 IF3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEKIRGSDIRLIGAEGENVGVVSPERAMEMAMDAGLDLVEISPNANPPVCKIMDFGKFK
CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEEECCCHH
YEQQKRESEARKKQKIIEIKEVKFRPNTDTNDYDVKMRNVFRFLENGDKVKITLRFRGRE
HHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCHH
MAHQNLGRELLERVAEDTKEAGRVENFPKMEGRQMVMLIGPLPR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCC
>Mature Secondary Structure
MNEKIRGSDIRLIGAEGENVGVVSPERAMEMAMDAGLDLVEISPNANPPVCKIMDFGKFK
CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEEECCCHH
YEQQKRESEARKKQKIIEIKEVKFRPNTDTNDYDVKMRNVFRFLENGDKVKITLRFRGRE
HHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCHH
MAHQNLGRELLERVAEDTKEAGRVENFPKMEGRQMVMLIGPLPR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA