Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

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The map label for this gene is cyp [H]

Identifier: 110680161

GI number: 110680161

Start: 2839430

End: 2840647

Strand: Direct

Name: cyp [H]

Synonym: RD1_2962

Alternate gene names: 110680161

Gene position: 2839430-2840647 (Clockwise)

Preceding gene: 110680160

Following gene: 110680163

Centisome position: 68.7

GC content: 61.58

Gene sequence:

>1218_bases
ATGCCTCTACTTTCTCAAGCGGACTTAAAGGCGGCCATGCAACGACTTATCCAATCCCCGCTGGACCCGGCTTTCGTGCA
AAACCCCTATGCATTTTACGCTGAGGTTTTTACCGGCGACACCATTCGCTACTGGCAAGACTACGACATGCCCGCAATTT
TTGATGCCGCCAACGTACAGGCGGTCCTGCGCAATCGTCGCTTCGGGCGCGCACTGCCGGCGGATCGGATCGGTCCACCG
CGCCCCCACCTCGCCGCCTTTGATGCCGTCGAAGCAGTCTCCATGCTTGATCTGGAGCCGCCTGATCACACCCGGTTGCG
CGGCCTGGTGCTGCGCGCCTTTACCTCGCGCCGAATCAAGGCGCTGGCGCCTGACATTCACGACATCTGCGACCGGCTGA
TCGCGGACCTGCCAAAGGGCGGGTGCAACCTGATCCCCGCATTTTGCACGGCACTCCCGGTGCGCATCATTGCCCGGCTG
CTGGGTGTGCCTGCGGAACGCTGCGGTGATCTGTTGCGCTGGTCCAATGCAATGGTGGCGATGTATCAGGCCGGGCGTAC
GCTCGAGATCGAACACGCCGCCAACGCGGCCGCAAGCGAGTTCACTGCCTTCCTGTCTGATTACATCGACATCAAACGGC
GCGCCCCGCAGGACGACCTGATCAGCCACCTGCTGCTGGCCGAGGAAAACGGCCAAAAACTCACCCGGCAAGAGTTGATC
GGCACCTGTATCCTGCTGCTCAATGCCGGGCACGAGGCGACGGTGCACACAATGGGCAACGCGGTCAAAGCGCTGCTGGA
ACATCAAACGCCGCCACAGGCCTTCACCGATCAGAATATCGCCGCAACAGTCGAAGAGGTGCTCAGGTTCGACCCGCCGT
TGCACATGTTCACCCGCTACAGTTACGAGGACACCGAAATCGGCGACCACACGATCCGCAGCGGTCAGCAGGTCGCCTTG
ATGCTCGGTGCCGCTGGCCGTGATCCGGCCCTATGCAAGGATCCGGACGTTTTTGATCCGTTTCGCGCACCCGTCCCACA
TGCCGCTTTTGGCGGTGGGTTGCATTTTTGCGTCGGCGCGCCACTCGCCCGGCTTGAGTTGCAAATCGGCTTGCAAAGGC
TCTTTGCCGCCCGCCCGAACCTCACCCTCAGCAGCCCGCCTCGATTTGCCAATGCGTACCACTTTCACGGCCTCGAACGC
CTCGACGTCACCACCTGA

Upstream 100 bases:

>100_bases
ACCGCGCAGGATTTCTCTCCCATCATCGAAGCACTGTCCGACAGTTGATGGCGCGGCATGTATGGGCGCCAACGCCCTGT
GATACATGCGCCGCGCGCCC

Downstream 100 bases:

>100_bases
CCCGACCCATCGCGCCTGAAGGGCTCAGGGTGCAACAAATCCCAAGCATGGAATGCGGCGCAGCCGCGCATTTGGATCAC
GCGAGAGCGTCATGCGAAAA

Product: cytochrome P450, putative

Products: ROH; oxidized flavoprotein; H2O

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MPLLSQADLKAAMQRLIQSPLDPAFVQNPYAFYAEVFTGDTIRYWQDYDMPAIFDAANVQAVLRNRRFGRALPADRIGPP
RPHLAAFDAVEAVSMLDLEPPDHTRLRGLVLRAFTSRRIKALAPDIHDICDRLIADLPKGGCNLIPAFCTALPVRIIARL
LGVPAERCGDLLRWSNAMVAMYQAGRTLEIEHAANAAASEFTAFLSDYIDIKRRAPQDDLISHLLLAEENGQKLTRQELI
GTCILLLNAGHEATVHTMGNAVKALLEHQTPPQAFTDQNIAATVEEVLRFDPPLHMFTRYSYEDTEIGDHTIRSGQQVAL
MLGAAGRDPALCKDPDVFDPFRAPVPHAAFGGGLHFCVGAPLARLELQIGLQRLFAARPNLTLSSPPRFANAYHFHGLER
LDVTT

Sequences:

>Translated_405_residues
MPLLSQADLKAAMQRLIQSPLDPAFVQNPYAFYAEVFTGDTIRYWQDYDMPAIFDAANVQAVLRNRRFGRALPADRIGPP
RPHLAAFDAVEAVSMLDLEPPDHTRLRGLVLRAFTSRRIKALAPDIHDICDRLIADLPKGGCNLIPAFCTALPVRIIARL
LGVPAERCGDLLRWSNAMVAMYQAGRTLEIEHAANAAASEFTAFLSDYIDIKRRAPQDDLISHLLLAEENGQKLTRQELI
GTCILLLNAGHEATVHTMGNAVKALLEHQTPPQAFTDQNIAATVEEVLRFDPPLHMFTRYSYEDTEIGDHTIRSGQQVAL
MLGAAGRDPALCKDPDVFDPFRAPVPHAAFGGGLHFCVGAPLARLELQIGLQRLFAARPNLTLSSPPRFANAYHFHGLER
LDVTT
>Mature_404_residues
PLLSQADLKAAMQRLIQSPLDPAFVQNPYAFYAEVFTGDTIRYWQDYDMPAIFDAANVQAVLRNRRFGRALPADRIGPPR
PHLAAFDAVEAVSMLDLEPPDHTRLRGLVLRAFTSRRIKALAPDIHDICDRLIADLPKGGCNLIPAFCTALPVRIIARLL
GVPAERCGDLLRWSNAMVAMYQAGRTLEIEHAANAAASEFTAFLSDYIDIKRRAPQDDLISHLLLAEENGQKLTRQELIG
TCILLLNAGHEATVHTMGNAVKALLEHQTPPQAFTDQNIAATVEEVLRFDPPLHMFTRYSYEDTEIGDHTIRSGQQVALM
LGAAGRDPALCKDPDVFDPFRAPVPHAAFGGGLHFCVGAPLARLELQIGLQRLFAARPNLTLSSPPRFANAYHFHGLERL
DVTT

Specific function: Involved in the metabolism of the antibiotic polyketide bacillaene which is involved in secondary metabolism. The substrate is dihydrobacillaene [H]

COG id: COG2124

COG function: function code Q; Cytochrome P450

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome P450 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001128
- InterPro:   IPR002397
- InterPro:   IPR017972 [H]

Pfam domain/function: PF00067 p450 [H]

EC number: 1.14.14.1

Molecular weight: Translated: 44735; Mature: 44604

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00086 CYTOCHROME_P450

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLLSQADLKAAMQRLIQSPLDPAFVQNPYAFYAEVFTGDTIRYWQDYDMPAIFDAANVQ
CCCCCHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHCCCEEEECCCCCCCHHCCHHHHH
AVLRNRRFGRALPADRIGPPRPHLAAFDAVEAVSMLDLEPPDHTRLRGLVLRAFTSRRIK
HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
ALAPDIHDICDRLIADLPKGGCNLIPAFCTALPVRIIARLLGVPAERCGDLLRWSNAMVA
HHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
MYQAGRTLEIEHAANAAASEFTAFLSDYIDIKRRAPQDDLISHLLLAEENGQKLTRQELI
HHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHH
GTCILLLNAGHEATVHTMGNAVKALLEHQTPPQAFTDQNIAATVEEVLRFDPPLHMFTRY
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHCCCCHHHHHCC
SYEDTEIGDHTIRSGQQVALMLGAAGRDPALCKDPDVFDPFRAPVPHAAFGGGLHFCVGA
CCCCCCCCCHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHCC
PLARLELQIGLQRLFAARPNLTLSSPPRFANAYHFHGLERLDVTT
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCC
>Mature Secondary Structure 
PLLSQADLKAAMQRLIQSPLDPAFVQNPYAFYAEVFTGDTIRYWQDYDMPAIFDAANVQ
CCCCHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHCCCEEEECCCCCCCHHCCHHHHH
AVLRNRRFGRALPADRIGPPRPHLAAFDAVEAVSMLDLEPPDHTRLRGLVLRAFTSRRIK
HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
ALAPDIHDICDRLIADLPKGGCNLIPAFCTALPVRIIARLLGVPAERCGDLLRWSNAMVA
HHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
MYQAGRTLEIEHAANAAASEFTAFLSDYIDIKRRAPQDDLISHLLLAEENGQKLTRQELI
HHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHH
GTCILLLNAGHEATVHTMGNAVKALLEHQTPPQAFTDQNIAATVEEVLRFDPPLHMFTRY
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHCCCCHHHHHCC
SYEDTEIGDHTIRSGQQVALMLGAAGRDPALCKDPDVFDPFRAPVPHAAFGGGLHFCVGA
CCCCCCCCCHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHCC
PLARLELQIGLQRLFAARPNLTLSSPPRFANAYHFHGLERLDVTT
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: RH; reduced flavoprotein; O2

Specific reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]