| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is yflP [H]
Identifier: 110680146
GI number: 110680146
Start: 2824799
End: 2825785
Strand: Direct
Name: yflP [H]
Synonym: RD1_2946
Alternate gene names: 110680146
Gene position: 2824799-2825785 (Clockwise)
Preceding gene: 110680142
Following gene: 110680147
Centisome position: 68.35
GC content: 61.5
Gene sequence:
>987_bases ATGAGTACATTGAAACTGGGCCGTCGGGCCCTGATTGGCGCGGCTGTGGCCGCAATGAGCCTTGGCGCACCAGCCTTTTC GGATGGTCATCAGGCGGTTGAGAGCATCCACTTCCTGATCCCGGGCGGTGCCGGCGGAGGCTGGGATGGCACGGCGCGCG GCACGGGCGAAGCGCTCACCGCCGCAGGTCTGGTCGGCACAGCCTCATACGAAAACATGTCAGGCGGCGGCGGCGGCAAG GCCATTGGCTATCTGATCGAGAACGCAGACAGCAATCACGGCACCCTGATGGTGAATTCCACACCCATCGTGATCCGGTC CCTGACAGGAGTGTTTCCGCACAACTTCCGGGATCTGACGCTGGTGGCGGGCACCATCGGTGACTATGCCGCCATCGTGG TGGGCAAGGACAGCCCCGTCAACAACATGGCCGACCTGCTGGCAGCCTATGACGCGGACCCGAATGGCACAGCCATCGGT GGCGGGTCGGTGCCGGGCGGCATGGACCACCTCGTGGCGGCCATGGTCATGGAAGCCGCGGGCAAGGATGCGCTTGGCGT AAAATACATCCCCTATGACGCGGGTGGCAAAGCGATGGCGGCCCTGCTGTCAGGTGAGATCGCCGCTCTGTCGACCGGGT TTTCCGAGGCCGTCGACTTGGCTGAAGCCGGCGAAGTCAAGATCATTGGCGTGACATCAGACGAGCGCGTCAGTGCCGCA CCCGATGCCATGACGATGAAGGAACAGGGTATCGACACAACCTTCATCAACTGGCGTGGTTTCTTTGGTGCGCCGGGCCT GCCCGCAGAGAAAGTCGCCGCCTATCAGGATGCGATCGCCAAGATGTACGACACGCCCGAGTGGGAAGAAGTGCGCGCCC GCAACGGATGGGTCAACATTCACAACCCCGGCGATGACTTCAAAGCCTTCCTTGAAGAGCAAGAGAAAGTCATCGGGGAC CTGATGAAAAAACTGGGCTTTTTGTAA
Upstream 100 bases:
>100_bases TTCGCATGAAGCGGCCGCGTGACAGGTCCATGTCAGGTTGCCATGTTTGAGTGCAATCAACTGAGCCGGAACAGCTACAG TTGTCAAATGGGAGGAACAC
Downstream 100 bases:
>100_bases AGCCCGGTTGACCGGGGCGCGCAGCTGATCGCGCCCCGGTCGTTTTACGCTTTGACTGCTCTGGGGGGTACTATGGCGCT GGATCGCTGGATCGGACTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 328; Mature: 327
Protein sequence:
>328_residues MSTLKLGRRALIGAAVAAMSLGAPAFSDGHQAVESIHFLIPGGAGGGWDGTARGTGEALTAAGLVGTASYENMSGGGGGK AIGYLIENADSNHGTLMVNSTPIVIRSLTGVFPHNFRDLTLVAGTIGDYAAIVVGKDSPVNNMADLLAAYDADPNGTAIG GGSVPGGMDHLVAAMVMEAAGKDALGVKYIPYDAGGKAMAALLSGEIAALSTGFSEAVDLAEAGEVKIIGVTSDERVSAA PDAMTMKEQGIDTTFINWRGFFGAPGLPAEKVAAYQDAIAKMYDTPEWEEVRARNGWVNIHNPGDDFKAFLEEQEKVIGD LMKKLGFL
Sequences:
>Translated_328_residues MSTLKLGRRALIGAAVAAMSLGAPAFSDGHQAVESIHFLIPGGAGGGWDGTARGTGEALTAAGLVGTASYENMSGGGGGK AIGYLIENADSNHGTLMVNSTPIVIRSLTGVFPHNFRDLTLVAGTIGDYAAIVVGKDSPVNNMADLLAAYDADPNGTAIG GGSVPGGMDHLVAAMVMEAAGKDALGVKYIPYDAGGKAMAALLSGEIAALSTGFSEAVDLAEAGEVKIIGVTSDERVSAA PDAMTMKEQGIDTTFINWRGFFGAPGLPAEKVAAYQDAIAKMYDTPEWEEVRARNGWVNIHNPGDDFKAFLEEQEKVIGD LMKKLGFL >Mature_327_residues STLKLGRRALIGAAVAAMSLGAPAFSDGHQAVESIHFLIPGGAGGGWDGTARGTGEALTAAGLVGTASYENMSGGGGGKA IGYLIENADSNHGTLMVNSTPIVIRSLTGVFPHNFRDLTLVAGTIGDYAAIVVGKDSPVNNMADLLAAYDADPNGTAIGG GSVPGGMDHLVAAMVMEAAGKDALGVKYIPYDAGGKAMAALLSGEIAALSTGFSEAVDLAEAGEVKIIGVTSDERVSAAP DAMTMKEQGIDTTFINWRGFFGAPGLPAEKVAAYQDAIAKMYDTPEWEEVRARNGWVNIHNPGDDFKAFLEEQEKVIGDL MKKLGFL
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 33738; Mature: 33606
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLKLGRRALIGAAVAAMSLGAPAFSDGHQAVESIHFLIPGGAGGGWDGTARGTGEALT CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHEEEEEECCCCCCCCCCCCCCCCHHH AAGLVGTASYENMSGGGGGKAIGYLIENADSNHGTLMVNSTPIVIRSLTGVFPHNFRDLT HHHHEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCEEEEHHHCCCCCCCCEEE LVAGTIGDYAAIVVGKDSPVNNMADLLAAYDADPNGTAIGGGSVPGGMDHLVAAMVMEAA EEEECCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHHHC GKDALGVKYIPYDAGGKAMAALLSGEIAALSTGFSEAVDLAEAGEVKIIGVTSDERVSAA CCCCCCEEEEEECCCHHHHHHHHHCCHHHHHCCHHHHHHHHCCCCEEEEEECCCCCCCCC PDAMTMKEQGIDTTFINWRGFFGAPGLPAEKVAAYQDAIAKMYDTPEWEEVRARNGWVNI CCHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEE HNPGDDFKAFLEEQEKVIGDLMKKLGFL CCCCHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure STLKLGRRALIGAAVAAMSLGAPAFSDGHQAVESIHFLIPGGAGGGWDGTARGTGEALT CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHEEEEEECCCCCCCCCCCCCCCCHHH AAGLVGTASYENMSGGGGGKAIGYLIENADSNHGTLMVNSTPIVIRSLTGVFPHNFRDLT HHHHEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCEEEEHHHCCCCCCCCEEE LVAGTIGDYAAIVVGKDSPVNNMADLLAAYDADPNGTAIGGGSVPGGMDHLVAAMVMEAA EEEECCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHHHC GKDALGVKYIPYDAGGKAMAALLSGEIAALSTGFSEAVDLAEAGEVKIIGVTSDERVSAA CCCCCCEEEEEECCCHHHHHHHHHCCHHHHHCCHHHHHHHHCCCCEEEEEECCCCCCCCC PDAMTMKEQGIDTTFINWRGFFGAPGLPAEKVAAYQDAIAKMYDTPEWEEVRARNGWVNI CCHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEE HNPGDDFKAFLEEQEKVIGDLMKKLGFL CCCCHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9272861; 9384377 [H]