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The map label for this gene is ydhC [H]

Identifier: 110680097

GI number: 110680097

Start: 2773243

End: 2773914

Strand: Direct

Name: ydhC [H]

Synonym: RD1_2894

Alternate gene names: 110680097

Gene position: 2773243-2773914 (Clockwise)

Preceding gene: 110680096

Following gene: 110680105

Centisome position: 67.1

GC content: 59.67

Gene sequence:

>672_bases
ATGGGAACCAAGCAAGCCAACCGGATTGCCGATGCTTTGGAAGAAATGGTTTTCACCGGCCAGTTCCGCGAAGGCGAGCG
GTTGGACGAGATGCGTCTGGCGAAGAAATTCGGCGTATCCCGCACCCCTGTGCGCGAGGCATTGCAGCGCCTTGTCGCAA
CGGATCTGGCAGCACAATTACCCCGACGCGGTGTCTTTGTGCGCCAACCCAATTCGATCACGCTGATCGAAATGTTTGAA
ACCATGGCCGAGGTCGAAGGCGTGTGCGGGCGGCTTGCTGCGCAGCGCATGACCGCCGAGGGCCTTGCCACGCTTGAGAC
CCTGAATGGCCTATGTCTTGACGCCATCGAACGGGACGACGCGGACAGCTATTCACACCACAACGAGAGCTTTCACCATC
TGATTTACCGTTCCGCCGGAAACTCCTTTCTGGAAGGTGAAGCACTGCGGCTTTATCGCCGTCTAAAGCCGTTCAGACGG
GTACAGTTCCAGTTGCGCGGGCGTATGCAGGACTCGGTTCAGGAACACGAAGCGCTGATCGAGGCCTTCGCCAGCGGGAA
TGCGGAGCGCGCCTGCGACATTCTGCGCTCCCACGTCGGAAGCCAGGGCGAGCGGTTTTTTCACCAGATGGCGCAACTGC
GTCGCAACCCGGACATCCGGATCGCGAGCTAG

Upstream 100 bases:

>100_bases
CCGATTTGCGACGTGCAACCTCTTGTTTGCACACAACGAATACCTAAATTATTCTCATATAAACCTGTCATCAAAAATCA
AACACAAGTCAGGGCGCAAC

Downstream 100 bases:

>100_bases
TGCGTCTGACGACATATCTGAGACATCACGAAGCATGTAACGCGTTGAAGTCTTTGATTTCGGTCAGCGTTACGCGGTTC
AGGTTTATCGCATGACGCCT

Product: transcription regulator, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MGTKQANRIADALEEMVFTGQFREGERLDEMRLAKKFGVSRTPVREALQRLVATDLAAQLPRRGVFVRQPNSITLIEMFE
TMAEVEGVCGRLAAQRMTAEGLATLETLNGLCLDAIERDDADSYSHHNESFHHLIYRSAGNSFLEGEALRLYRRLKPFRR
VQFQLRGRMQDSVQEHEALIEAFASGNAERACDILRSHVGSQGERFFHQMAQLRRNPDIRIAS

Sequences:

>Translated_223_residues
MGTKQANRIADALEEMVFTGQFREGERLDEMRLAKKFGVSRTPVREALQRLVATDLAAQLPRRGVFVRQPNSITLIEMFE
TMAEVEGVCGRLAAQRMTAEGLATLETLNGLCLDAIERDDADSYSHHNESFHHLIYRSAGNSFLEGEALRLYRRLKPFRR
VQFQLRGRMQDSVQEHEALIEAFASGNAERACDILRSHVGSQGERFFHQMAQLRRNPDIRIAS
>Mature_222_residues
GTKQANRIADALEEMVFTGQFREGERLDEMRLAKKFGVSRTPVREALQRLVATDLAAQLPRRGVFVRQPNSITLIEMFET
MAEVEGVCGRLAAQRMTAEGLATLETLNGLCLDAIERDDADSYSHHNESFHHLIYRSAGNSFLEGEALRLYRRLKPFRRV
QFQLRGRMQDSVQEHEALIEAFASGNAERACDILRSHVGSQGERFFHQMAQLRRNPDIRIAS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25363; Mature: 25232

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTKQANRIADALEEMVFTGQFREGERLDEMRLAKKFGVSRTPVREALQRLVATDLAAQL
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
PRRGVFVRQPNSITLIEMFETMAEVEGVCGRLAAQRMTAEGLATLETLNGLCLDAIERDD
CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ADSYSHHNESFHHLIYRSAGNSFLEGEALRLYRRLKPFRRVQFQLRGRMQDSVQEHEALI
CCHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAFASGNAERACDILRSHVGSQGERFFHQMAQLRRNPDIRIAS
HHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEECC
>Mature Secondary Structure 
GTKQANRIADALEEMVFTGQFREGERLDEMRLAKKFGVSRTPVREALQRLVATDLAAQL
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
PRRGVFVRQPNSITLIEMFETMAEVEGVCGRLAAQRMTAEGLATLETLNGLCLDAIERDD
CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ADSYSHHNESFHHLIYRSAGNSFLEGEALRLYRRLKPFRRVQFQLRGRMQDSVQEHEALI
CCHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAFASGNAERACDILRSHVGSQGERFFHQMAQLRRNPDIRIAS
HHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]