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The map label for this gene is ocd2 [H]

Identifier: 110680092

GI number: 110680092

Start: 2767649

End: 2768626

Strand: Reverse

Name: ocd2 [H]

Synonym: RD1_2889

Alternate gene names: 110680092

Gene position: 2768626-2767649 (Counterclockwise)

Preceding gene: 110680093

Following gene: 110680091

Centisome position: 66.99

GC content: 59.92

Gene sequence:

>978_bases
ATGTCCAAAGGACTTTTGATCGTAGGCGAAGATATCTGTGCCGAGGTCGTCAGCAGTGCCGATGCCTTCACCGCCGTCGA
GGCCGTTTTCGGGGCCATGGCAAAGGGAGACGCCTATAACTTCCCGGTCATCCGCGAGGCGATCGGATATGCCGATGCGC
TTTATGGGTTCAAATCCGGGTTCGACAAGGCGGGCAAAACGCTGGGTGTGAAATCCGGCGGATACTGGCCGGGCAATATG
GACAAGGGTCTGACCAACCACCAGTCCACGATTTTTCTGTTTGATCCGGACACAGGTATGCTGGAGGCGCTCGTTGGGGG
CAATTACCTGACGGCTGTGCGCACGGCGGCATCTTCGTCCGTTTCCATCGCGCATCTGGCGCGCAAGGATGCCAAAGTGC
TGGGCATGGTCGGGGCAGGGCATCAGTCGACCTTTCAGTTGCGCGCAGCCGCAGAGCAACGGGATTTCGAGAAAGTCGTC
GCATGGAATCCGCATCCCGATATGCTACCACGCCTCGGCGCTGTGGCAGAAGAGCTTGGGCTGGCCTTTGAAGCCGTCAC
GCAGGAAGAGCTTGGCGCGCAGGCGGATGTGATCATCACCATCACCTCGGCCTTTGAGCCCTTGTTGATGAAAGACTGGA
TCAAGCCGGGCACGCATATCGCCTGCATGGGCACGGATACCAAGGGCAAGCAGGAGGTTGACCCCGAACTGCTCGTGTCC
GCGACTGTCTTTGCCGATGAAATCGCACAGTCTGTGACGATTGGCGAAGCGCAGCATGCGGTGGCATCGGGCCGCTTGTC
TGATGCCGAAATCACGCCCATCGGCGCGGTGATCAACGGCACCCATGCCGGACGCAGCAGTGATCAGCAGATCACCTTGT
TCGATGGCACTGGCGTCGGGCTTCAGGATCTTGCGGTGGCATCCGTGGCCGCGCGCGAAGCGGAAAGCCGCGGCAAGGCG
ACGCGTATCGCTTTGTGA

Upstream 100 bases:

>100_bases
GCGTGGCAAGGCCTACTGAGCCGCACCCGGCATCAGAAGTGACACCGCGCCCGGCACGCCCGGGCGCGACTTACAAAAAA
GACAAAGACAGGAATACCCG

Downstream 100 bases:

>100_bases
CGCGCGTCGGGTTCTGTTCTGGCTGCCAGGCACTGCCTTGCCGAGCAATCCTTAGTTTTGCCGGGGCGTTGGCGATGAGA
GCGTTTTTCCCAAACCAACC

Product: ornithine cyclodeaminase/mu-crystallin family protein

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MSKGLLIVGEDICAEVVSSADAFTAVEAVFGAMAKGDAYNFPVIREAIGYADALYGFKSGFDKAGKTLGVKSGGYWPGNM
DKGLTNHQSTIFLFDPDTGMLEALVGGNYLTAVRTAASSSVSIAHLARKDAKVLGMVGAGHQSTFQLRAAAEQRDFEKVV
AWNPHPDMLPRLGAVAEELGLAFEAVTQEELGAQADVIITITSAFEPLLMKDWIKPGTHIACMGTDTKGKQEVDPELLVS
ATVFADEIAQSVTIGEAQHAVASGRLSDAEITPIGAVINGTHAGRSSDQQITLFDGTGVGLQDLAVASVAAREAESRGKA
TRIAL

Sequences:

>Translated_325_residues
MSKGLLIVGEDICAEVVSSADAFTAVEAVFGAMAKGDAYNFPVIREAIGYADALYGFKSGFDKAGKTLGVKSGGYWPGNM
DKGLTNHQSTIFLFDPDTGMLEALVGGNYLTAVRTAASSSVSIAHLARKDAKVLGMVGAGHQSTFQLRAAAEQRDFEKVV
AWNPHPDMLPRLGAVAEELGLAFEAVTQEELGAQADVIITITSAFEPLLMKDWIKPGTHIACMGTDTKGKQEVDPELLVS
ATVFADEIAQSVTIGEAQHAVASGRLSDAEITPIGAVINGTHAGRSSDQQITLFDGTGVGLQDLAVASVAAREAESRGKA
TRIAL
>Mature_324_residues
SKGLLIVGEDICAEVVSSADAFTAVEAVFGAMAKGDAYNFPVIREAIGYADALYGFKSGFDKAGKTLGVKSGGYWPGNMD
KGLTNHQSTIFLFDPDTGMLEALVGGNYLTAVRTAASSSVSIAHLARKDAKVLGMVGAGHQSTFQLRAAAEQRDFEKVVA
WNPHPDMLPRLGAVAEELGLAFEAVTQEELGAQADVIITITSAFEPLLMKDWIKPGTHIACMGTDTKGKQEVDPELLVSA
TVFADEIAQSVTIGEAQHAVASGRLSDAEITPIGAVINGTHAGRSSDQQITLFDGTGVGLQDLAVASVAAREAESRGKAT
RIAL

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI62241008, Length=243, Percent_Identity=32.9218106995885, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI4503065, Length=243, Percent_Identity=32.9218106995885, Blast_Score=115, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 34013; Mature: 33882

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGLLIVGEDICAEVVSSADAFTAVEAVFGAMAKGDAYNFPVIREAIGYADALYGFKSG
CCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
FDKAGKTLGVKSGGYWPGNMDKGLTNHQSTIFLFDPDTGMLEALVGGNYLTAVRTAASSS
HHHCCCEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHCCCHHHHHHHHCCCC
VSIAHLARKDAKVLGMVGAGHQSTFQLRAAAEQRDFEKVVAWNPHPDMLPRLGAVAEELG
CHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCHHHHEEECCCHHHHHHHHHHHHHHH
LAFEAVTQEELGAQADVIITITSAFEPLLMKDWIKPGTHIACMGTDTKGKQEVDPELLVS
HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHH
ATVFADEIAQSVTIGEAQHAVASGRLSDAEITPIGAVINGTHAGRSSDQQITLFDGTGVG
HHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEHEEECCCCCCCCCCEEEEEECCCCC
LQDLAVASVAAREAESRGKATRIAL
HHHHHHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure 
SKGLLIVGEDICAEVVSSADAFTAVEAVFGAMAKGDAYNFPVIREAIGYADALYGFKSG
CCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
FDKAGKTLGVKSGGYWPGNMDKGLTNHQSTIFLFDPDTGMLEALVGGNYLTAVRTAASSS
HHHCCCEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHCCCHHHHHHHHCCCC
VSIAHLARKDAKVLGMVGAGHQSTFQLRAAAEQRDFEKVVAWNPHPDMLPRLGAVAEELG
CHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCHHHHEEECCCHHHHHHHHHHHHHHH
LAFEAVTQEELGAQADVIITITSAFEPLLMKDWIKPGTHIACMGTDTKGKQEVDPELLVS
HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHH
ATVFADEIAQSVTIGEAQHAVASGRLSDAEITPIGAVINGTHAGRSSDQQITLFDGTGVG
HHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEHEEECCCCCCCCCCEEEEEECCCCC
LQDLAVASVAAREAESRGKATRIAL
HHHHHHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]