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The map label for this gene is 110680093

Identifier: 110680093

GI number: 110680093

Start: 2768708

End: 2769871

Strand: Reverse

Name: 110680093

Synonym: RD1_2890

Alternate gene names: NA

Gene position: 2769871-2768708 (Counterclockwise)

Preceding gene: 110680094

Following gene: 110680092

Centisome position: 67.02

GC content: 58.33

Gene sequence:

>1164_bases
ATGAACAAGCAAGTGAACTTTGAAGACTATGAAGTCGGCTATGATATCCCTGCCGCGATTGGTATGGATGAGGCCGATAT
CCAGACGCCCTGCCTTGTGCTGGACCTCGACGCGCTGGAGCGTAACATCAAGAAGATGGGCGATTTTGCCAAGGCGCACG
GCATGCGCCACCGGGTACATGGCAAGATGCACAAATCCGTCGATGTGGCGCTCTTGCAGGAAGAACTTGGCGGCTCTGTC
GGTGTGTGCTGTCAGAAGGTCTCAGAGGCTGAGGTCTTTGCCCGCGGTGGGATCAAGGATGTGCTGGTCTCCAACCAGGT
GCGCCAGCCCGAAAAGATCGACCGTCTTGCGCGTCTGCCGAAACTGGGTGCGCGCGCCATCTGCTGTGTCGATGACATCG
ACAATGTGGCCGATCTGTCGCAGGCGGCGTTGCGCCACGGTACGCAAATCGAATGCCTCGTGGAAATCGACGTGGGCGCG
GGCCGGTGCGGTGTGCAATATGGCCAGCCGGTCGTTGATCTCGCACTCGCGATTGACGCGGCGGAGGGTCTGAAGTTTGC
CGGTATCCAGGCCTATCAGGGCGCGATGCAGCACATGGACAGCTACGAAGACCGCAAGCGCAAGACACAGATCGCCATTG
ATCAGGTGCGCGAAAGCCTTGATCTGCTCAAGGTGGCGGGTCTGGAGTGTGACATCGTAGGAGGTGGCGGCACGGGCTCC
TATTATTTTGAAAGCGCTTCGGGCGTGTTCAACGAATTGCAGTGTGGGTCCTACGCCTTCATGGATGCAGATTACGGGCG
TATTCTCGACAAGAATGGCAACCGGATTGATCAGGGGGAGTGGGAAAACGCGTTGTTTATCCTGACCTCCGTGATGAGCC
ACGCCAAGGCAGACAAGGCCATCGTGGATGCGGGCCTCAAGGCGCAATCTGTGGACAGTGGTCTGCCGACGATCTATGGC
CGCACGGATGTGGAATATGTCAAATGCTCGGATGAGCATGGGGTTGTTGCCGACCCGCATGGGGCGCTCAAGGTCAATGA
CAAGTTGAAACTGGTCCCGGGTCACTGTGATCCGACCTGCAATGTGCACGACTGGTATGTCGGCGTGCGCGGCGGCAAGG
TTGAAACGCTCTGGCCGGTATCGGCGCGTGGCAAGGCCTACTGA

Upstream 100 bases:

>100_bases
CCCGGAGGTTTTCCGGGGCAAGCGCGTGGGGGTGATCATCACCGGTGGCAATGTGGATTTGGATAAACTGCCCTGGACGC
TGGGCTAAGGAGGATGCACC

Downstream 100 bases:

>100_bases
GCCGCACCCGGCATCAGAAGTGACACCGCGCCCGGCACGCCCGGGCGCGACTTACAAAAAAGACAAAGACAGGAATACCC
GATGTCCAAAGGACTTTTGA

Product: threonine aldolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MNKQVNFEDYEVGYDIPAAIGMDEADIQTPCLVLDLDALERNIKKMGDFAKAHGMRHRVHGKMHKSVDVALLQEELGGSV
GVCCQKVSEAEVFARGGIKDVLVSNQVRQPEKIDRLARLPKLGARAICCVDDIDNVADLSQAALRHGTQIECLVEIDVGA
GRCGVQYGQPVVDLALAIDAAEGLKFAGIQAYQGAMQHMDSYEDRKRKTQIAIDQVRESLDLLKVAGLECDIVGGGGTGS
YYFESASGVFNELQCGSYAFMDADYGRILDKNGNRIDQGEWENALFILTSVMSHAKADKAIVDAGLKAQSVDSGLPTIYG
RTDVEYVKCSDEHGVVADPHGALKVNDKLKLVPGHCDPTCNVHDWYVGVRGGKVETLWPVSARGKAY

Sequences:

>Translated_387_residues
MNKQVNFEDYEVGYDIPAAIGMDEADIQTPCLVLDLDALERNIKKMGDFAKAHGMRHRVHGKMHKSVDVALLQEELGGSV
GVCCQKVSEAEVFARGGIKDVLVSNQVRQPEKIDRLARLPKLGARAICCVDDIDNVADLSQAALRHGTQIECLVEIDVGA
GRCGVQYGQPVVDLALAIDAAEGLKFAGIQAYQGAMQHMDSYEDRKRKTQIAIDQVRESLDLLKVAGLECDIVGGGGTGS
YYFESASGVFNELQCGSYAFMDADYGRILDKNGNRIDQGEWENALFILTSVMSHAKADKAIVDAGLKAQSVDSGLPTIYG
RTDVEYVKCSDEHGVVADPHGALKVNDKLKLVPGHCDPTCNVHDWYVGVRGGKVETLWPVSARGKAY
>Mature_387_residues
MNKQVNFEDYEVGYDIPAAIGMDEADIQTPCLVLDLDALERNIKKMGDFAKAHGMRHRVHGKMHKSVDVALLQEELGGSV
GVCCQKVSEAEVFARGGIKDVLVSNQVRQPEKIDRLARLPKLGARAICCVDDIDNVADLSQAALRHGTQIECLVEIDVGA
GRCGVQYGQPVVDLALAIDAAEGLKFAGIQAYQGAMQHMDSYEDRKRKTQIAIDQVRESLDLLKVAGLECDIVGGGGTGS
YYFESASGVFNELQCGSYAFMDADYGRILDKNGNRIDQGEWENALFILTSVMSHAKADKAIVDAGLKAQSVDSGLPTIYG
RTDVEYVKCSDEHGVVADPHGALKVNDKLKLVPGHCDPTCNVHDWYVGVRGGKVETLWPVSARGKAY

Specific function: Catalyzes the reversible cleavage of D-theronine or D- allothreonine into glycine and acetaldehyde. Can also cleave D- beta-phenylserine, D-beta-hydroxy-alpha-aminovaleric acid, D-beta- 3,4-dihydroxyphenylserine and D-beta-3,4- methylenedioxyphenylserine

COG id: COG3616

COG function: function code E; Predicted amino acid aldolase or racemase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DSD1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: =4.1.2.42 [H]

Molecular weight: Translated: 42003; Mature: 42003

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKQVNFEDYEVGYDIPAAIGMDEADIQTPCLVLDLDALERNIKKMGDFAKAHGMRHRVH
CCCCCCCCCEECCCCCCHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHH
GKMHKSVDVALLQEELGGSVGVCCQKVSEAEVFARGGIKDVLVSNQVRQPEKIDRLARLP
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHCC
KLGARAICCVDDIDNVADLSQAALRHGTQIECLVEIDVGAGRCGVQYGQPVVDLALAIDA
CCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHH
AEGLKFAGIQAYQGAMQHMDSYEDRKRKTQIAIDQVRESLDLLKVAGLECDIVGGGGTGS
HCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
YYFESASGVFNELQCGSYAFMDADYGRILDKNGNRIDQGEWENALFILTSVMSHAKADKA
EEEECHHHHHHHHCCCCEEEECCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
IVDAGLKAQSVDSGLPTIYGRTDVEYVKCSDEHGVVADPHGALKVNDKLKLVPGHCDPTC
HHHCCCCHHCCCCCCCEEECCCCCEEEEECCCCCEEECCCCCEEECCEEEEECCCCCCCC
NVHDWYVGVRGGKVETLWPVSARGKAY
CCEEEEEEECCCEEEEEECCCCCCCCC
>Mature Secondary Structure
MNKQVNFEDYEVGYDIPAAIGMDEADIQTPCLVLDLDALERNIKKMGDFAKAHGMRHRVH
CCCCCCCCCEECCCCCCHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHH
GKMHKSVDVALLQEELGGSVGVCCQKVSEAEVFARGGIKDVLVSNQVRQPEKIDRLARLP
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHCC
KLGARAICCVDDIDNVADLSQAALRHGTQIECLVEIDVGAGRCGVQYGQPVVDLALAIDA
CCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHH
AEGLKFAGIQAYQGAMQHMDSYEDRKRKTQIAIDQVRESLDLLKVAGLECDIVGGGGTGS
HCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
YYFESASGVFNELQCGSYAFMDADYGRILDKNGNRIDQGEWENALFILTSVMSHAKADKA
EEEECHHHHHHHHCCCCEEEECCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
IVDAGLKAQSVDSGLPTIYGRTDVEYVKCSDEHGVVADPHGALKVNDKLKLVPGHCDPTC
HHHCCCCHHCCCCCCCEEECCCCCEEEEECCCCCEEECCCCCEEECCEEEEECCCCCCCC
NVHDWYVGVRGGKVETLWPVSARGKAY
CCEEEEEEECCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9642221 [H]