| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110680031
Identifier: 110680031
GI number: 110680031
Start: 2695033
End: 2695782
Strand: Direct
Name: 110680031
Synonym: RD1_2824
Alternate gene names: NA
Gene position: 2695033-2695782 (Clockwise)
Preceding gene: 110680030
Following gene: 110680035
Centisome position: 65.21
GC content: 56.8
Gene sequence:
>750_bases ATGCTGAAAAAACTACTGATGGCTTGTACCCTGAGCCTGATGAGTGCAACCGCTCCGGCGATGGCGCTCGACCTGAATGC CATGTCAGATGAAGAACGCGCACAGTTCGGCGAACAGGTGCGCGCCTATCTGATGGAAAATCCGCAGGTGATCATGGAGG CCGTCAACGCATTGGAAGAACGGCAAGCCGCAGCGCAGGCGCAGGCTGATGTCGATCTGGTCCGCCAGAATGCCGAAGCG ATTTTCAACGACGGGTTTTCCTATGTCGGCGGCAATCCGCAGGGTGATGTGACCCTCGTGGAGTTCATGGATTATCGTTG CGGCTTTTGCAAACGTGCCTTTGGCGAGGTGGAAAAACTGCTCGCTGCGGATGGCAACATTCGCTTTGTCGTCAAGGAGT TCCCGATCCTCGGAGAACAGTCCCTGATTGCGTCCCGATTTGCCATTGCCACCAAACTGGAGGAAGGCCGCGACGCTTAC AAACAGATGCATGATGCCCTGATGTCCTACAACGGCGACATCACCATCACGGCCCTGAGGCGCCTTGCGGATACCTTCGG CCTGAACGCGGATCAGATCGAAGCGCGTATGGATGCCGACGAGGTCACCCAAGAACTGATGGAAACGCGCGCGCTCGCGC AGCGGCTGCAGATCAGCGGCACACCGACTTTCGTGCTCGAAGATGAGATGTTGCGTGGGTTCCTGCCGATGGACCAGCTG CAAATGATCGTTGAAGAAAAACGCGGTTGA
Upstream 100 bases:
>100_bases CAAACGGGCCGTCGATCTGTTGCCGGAAGGGTCCGGCCCTTGGCAACGGGCACAAGATGTGTTGATTGCATCCGAACGCG CCGCAAAACGGAGATAGACT
Downstream 100 bases:
>100_bases TCGACCGCGTTATTCGGCCGCATCCGCATGGGCTGCCGCAGCCTCAAGCTCGGCGGCCTTTTTTTCGACCTGCTCCACGA TATGCTCGATCATCTGGTCA
Product: outer membrane protein, putative
Products: NA
Alternate protein names: Outer Membrane Protein; Dsba Oxidoreductase; DSBA-Like Thioredoxin Domain Protein; ThiolDisulfide Interchange Protein DsbA; Protein-Disulfide Isomerase; Twin-Arginine Translocation Pathway Signal; DSBA-Like Thioredoxin Domain-Containing Protein; Disulfide Oxidoreductase; 27kDa Outer Membrane Protein; DsbA Oxidoreductase; Thioredoxin Domain Protein; 27 KDa Outer Membrane Protein; Metal Resistance Protein; Disulfide Bond Formation Protein D; Secreted Protein Suppressor For Copper-Sensitivity C; DsbA-Like Disulfide Oxidoreductase; Thioredoxin Domain-Containing Protein; Dsba Oxidoreductase Family Protein; Secreted Protein Suppressor For Copper-Sensitivity ScsC; ThiolDisulfide Oxidoreductase; Suppressor For Copper-Sensitivity C; Oxidoreductase; Disulfide Bonded Thioredoxin Protein; DSBA Family Oxidoreductase; BcfH Protein; Dsba-Like Thioredoxin Domain Protein; Copper-Sensitivity Suppressor C Protein; Secreted Copper-Sensitivity Suppressor C; Fis Family Transcriptional Regulator
Number of amino acids: Translated: 249; Mature: 249
Protein sequence:
>249_residues MLKKLLMACTLSLMSATAPAMALDLNAMSDEERAQFGEQVRAYLMENPQVIMEAVNALEERQAAAQAQADVDLVRQNAEA IFNDGFSYVGGNPQGDVTLVEFMDYRCGFCKRAFGEVEKLLAADGNIRFVVKEFPILGEQSLIASRFAIATKLEEGRDAY KQMHDALMSYNGDITITALRRLADTFGLNADQIEARMDADEVTQELMETRALAQRLQISGTPTFVLEDEMLRGFLPMDQL QMIVEEKRG
Sequences:
>Translated_249_residues MLKKLLMACTLSLMSATAPAMALDLNAMSDEERAQFGEQVRAYLMENPQVIMEAVNALEERQAAAQAQADVDLVRQNAEA IFNDGFSYVGGNPQGDVTLVEFMDYRCGFCKRAFGEVEKLLAADGNIRFVVKEFPILGEQSLIASRFAIATKLEEGRDAY KQMHDALMSYNGDITITALRRLADTFGLNADQIEARMDADEVTQELMETRALAQRLQISGTPTFVLEDEMLRGFLPMDQL QMIVEEKRG >Mature_249_residues MLKKLLMACTLSLMSATAPAMALDLNAMSDEERAQFGEQVRAYLMENPQVIMEAVNALEERQAAAQAQADVDLVRQNAEA IFNDGFSYVGGNPQGDVTLVEFMDYRCGFCKRAFGEVEKLLAADGNIRFVVKEFPILGEQSLIASRFAIATKLEEGRDAY KQMHDALMSYNGDITITALRRLADTFGLNADQIEARMDADEVTQELMETRALAQRLQISGTPTFVLEDEMLRGFLPMDQL QMIVEEKRG
Specific function: Unknown
COG id: COG1651
COG function: function code O; Protein-disulfide isomerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27752; Mature: 27752
Theoretical pI: Translated: 4.25; Mature: 4.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 6.0 %Met (Translated Protein) 7.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 6.0 %Met (Mature Protein) 7.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKKLLMACTLSLMSATAPAMALDLNAMSDEERAQFGEQVRAYLMENPQVIMEAVNALEE CHHHHHHHHHHHHHHHCCCHHHEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH RQAAAQAQADVDLVRQNAEAIFNDGFSYVGGNPQGDVTLVEFMDYRCGFCKRAFGEVEKL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LAADGNIRFVVKEFPILGEQSLIASRFAIATKLEEGRDAYKQMHDALMSYNGDITITALR HHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH RLADTFGLNADQIEARMDADEVTQELMETRALAQRLQISGTPTFVLEDEMLRGFLPMDQL HHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHCCCCHHHH QMIVEEKRG HHHHHHCCC >Mature Secondary Structure MLKKLLMACTLSLMSATAPAMALDLNAMSDEERAQFGEQVRAYLMENPQVIMEAVNALEE CHHHHHHHHHHHHHHHCCCHHHEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH RQAAAQAQADVDLVRQNAEAIFNDGFSYVGGNPQGDVTLVEFMDYRCGFCKRAFGEVEKL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LAADGNIRFVVKEFPILGEQSLIASRFAIATKLEEGRDAYKQMHDALMSYNGDITITALR HHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH RLADTFGLNADQIEARMDADEVTQELMETRALAQRLQISGTPTFVLEDEMLRGFLPMDQL HHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHCCCCHHHH QMIVEEKRG HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA