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The map label for this gene is yfgC [C]

Identifier: 110680030

GI number: 110680030

Start: 2693674

End: 2695029

Strand: Direct

Name: yfgC [C]

Synonym: RD1_2823

Alternate gene names: 110680030

Gene position: 2693674-2695029 (Clockwise)

Preceding gene: 110680024

Following gene: 110680031

Centisome position: 65.17

GC content: 61.28

Gene sequence:

>1356_bases
ATGAAAACCGCTCCTTATGGTGACATGTGCTTTCATCGCGTATTCCGGCGGGCGTCAATCCCGATGCTGATCTTTTGTCT
GTTTGCACAGACAGTGTCAGCGCAGGGGCTTTTGCGCGATGCGGATCTTGAATACGGGCTGAAACAACTCGCGGCCCCGG
TGCTGACTGCTGCCGGCCTCAGCCCGTCGCGCGTCAAGATTCTGGTTGTCGATGACAGTTCGCTGAACGCATTTGTCATC
AGCACAGACGCGATTTTCCTGCACTACGGGCTGATCAACCGCATGAGCAACGCCGCGATGCTGCAGGGTGTGATCGCGCA
TGAAGCGGCGCATATCGCCAATGGGCACCTCACCCGGCGGATGAACAACCTTGCCAGCGCGCGCACGGCCGCCGGGTTTG
GCATAGCCCTTGCCGCTGTTGCTGCAGCAGCGGGTGGCGGCGAGGCTGGTGCGGGCGTCTTGCTGGGCACCCAAAGCTCC
GCCATTAATCGCTTTTTGCGCCATACCCGCGCCGAAGAGGCCTCAGCCGATCAATCCGCCGTGCGGTTCATGCGCTCTGC
GGGAATCAACCCGGCGGGCATGTCGCAGGTTCTGCAACTCTTCCGGGGTCAGGAACTGCTGGCCGAAACGCGACAAGACC
CCTACACCCGCTCGCACCCCTTGTCGCGGGATCGCATACGCGCGCTCGAGGGCTATGTCGCAGCCTATGGGGATGCGCCG
GTCGATAACTCCGCCGCCGACTACTGGTTTGAACGGGTCAAGGGAAAGCTCAGCGCCTATACCCGTGCGCCCAAATGGAC
GCTGCGCCGGCTGAACGAAAGCCCCTATCAAGACGTGCGACTGCTGCGCGAAGCCATTGCAGAGCATCGTCAATCGCGCA
CGAAACAGGCGCTTGCCGCGATTGACAAGGCCATCGCGCTGCGGCCCAACGATCCGTTTTATCACGACCAGCGCGGGCAA
ATCCTTTTTGAGACGCGCAACTTTTCCGCCGCCGCCGCGGCCTACGGGCGGGCAGTGCAACTGGCCCCCAATGATGCGCT
GATCCTGTCTGGTTACGGGCGTGCGCTGTTGGTCGAAGACAACATCAGCAAGGCCCGACAGGTCCTTGAAAAGGCACGCA
CAATAGACTTCAGAGACGGGACGATGCTGCGCGATCTGTCGGTCGCATATGCAAAATCCGGTCAACGGGGCATGGCGTCG
GTGGTGACTGCCGAACGTTACGCTTTGACGGGGCGGCTGAAAGACGCCGCCATTCACGCCAAACGGGCCGTCGATCTGTT
GCCGGAAGGGTCCGGCCCTTGGCAACGGGCACAAGATGTGTTGATTGCATCCGAACGCGCCGCAAAACGGAGATAG

Upstream 100 bases:

>100_bases
CATGTGAATTATGTGGCGTCCCGCCGCCTCTGCCCGATGCGCTGCCTCCATCACGTCCATCACAATGAAGGGATCGACTG
AAGAACGCCTTGAAACCCGC

Downstream 100 bases:

>100_bases
ACTATGCTGAAAAAACTACTGATGGCTTGTACCCTGAGCCTGATGAGTGCAACCGCTCCGGCGATGGCGCTCGACCTGAA
TGCCATGTCAGATGAAGAAC

Product: M48 family peptidase putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MKTAPYGDMCFHRVFRRASIPMLIFCLFAQTVSAQGLLRDADLEYGLKQLAAPVLTAAGLSPSRVKILVVDDSSLNAFVI
STDAIFLHYGLINRMSNAAMLQGVIAHEAAHIANGHLTRRMNNLASARTAAGFGIALAAVAAAAGGGEAGAGVLLGTQSS
AINRFLRHTRAEEASADQSAVRFMRSAGINPAGMSQVLQLFRGQELLAETRQDPYTRSHPLSRDRIRALEGYVAAYGDAP
VDNSAADYWFERVKGKLSAYTRAPKWTLRRLNESPYQDVRLLREAIAEHRQSRTKQALAAIDKAIALRPNDPFYHDQRGQ
ILFETRNFSAAAAAYGRAVQLAPNDALILSGYGRALLVEDNISKARQVLEKARTIDFRDGTMLRDLSVAYAKSGQRGMAS
VVTAERYALTGRLKDAAIHAKRAVDLLPEGSGPWQRAQDVLIASERAAKRR

Sequences:

>Translated_451_residues
MKTAPYGDMCFHRVFRRASIPMLIFCLFAQTVSAQGLLRDADLEYGLKQLAAPVLTAAGLSPSRVKILVVDDSSLNAFVI
STDAIFLHYGLINRMSNAAMLQGVIAHEAAHIANGHLTRRMNNLASARTAAGFGIALAAVAAAAGGGEAGAGVLLGTQSS
AINRFLRHTRAEEASADQSAVRFMRSAGINPAGMSQVLQLFRGQELLAETRQDPYTRSHPLSRDRIRALEGYVAAYGDAP
VDNSAADYWFERVKGKLSAYTRAPKWTLRRLNESPYQDVRLLREAIAEHRQSRTKQALAAIDKAIALRPNDPFYHDQRGQ
ILFETRNFSAAAAAYGRAVQLAPNDALILSGYGRALLVEDNISKARQVLEKARTIDFRDGTMLRDLSVAYAKSGQRGMAS
VVTAERYALTGRLKDAAIHAKRAVDLLPEGSGPWQRAQDVLIASERAAKRR
>Mature_451_residues
MKTAPYGDMCFHRVFRRASIPMLIFCLFAQTVSAQGLLRDADLEYGLKQLAAPVLTAAGLSPSRVKILVVDDSSLNAFVI
STDAIFLHYGLINRMSNAAMLQGVIAHEAAHIANGHLTRRMNNLASARTAAGFGIALAAVAAAAGGGEAGAGVLLGTQSS
AINRFLRHTRAEEASADQSAVRFMRSAGINPAGMSQVLQLFRGQELLAETRQDPYTRSHPLSRDRIRALEGYVAAYGDAP
VDNSAADYWFERVKGKLSAYTRAPKWTLRRLNESPYQDVRLLREAIAEHRQSRTKQALAAIDKAIALRPNDPFYHDQRGQ
ILFETRNFSAAAAAYGRAVQLAPNDALILSGYGRALLVEDNISKARQVLEKARTIDFRDGTMLRDLSVAYAKSGQRGMAS
VVTAERYALTGRLKDAAIHAKRAVDLLPEGSGPWQRAQDVLIASERAAKRR

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=190, Percent_Identity=23.6842105263158, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 49146; Mature: 49146

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTAPYGDMCFHRVFRRASIPMLIFCLFAQTVSAQGLLRDADLEYGLKQLAAPVLTAAGL
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC
SPSRVKILVVDDSSLNAFVISTDAIFLHYGLINRMSNAAMLQGVIAHEAAHIANGHLTRR
CCCEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
MNNLASARTAAGFGIALAAVAAAAGGGEAGAGVLLGTQSSAINRFLRHTRAEEASADQSA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCHHHH
VRFMRSAGINPAGMSQVLQLFRGQELLAETRQDPYTRSHPLSRDRIRALEGYVAAYGDAP
HHHHHHCCCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
VDNSAADYWFERVKGKLSAYTRAPKWTLRRLNESPYQDVRLLREAIAEHRQSRTKQALAA
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IDKAIALRPNDPFYHDQRGQILFETRNFSAAAAAYGRAVQLAPNDALILSGYGRALLVED
HHHHHEECCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEECCCCEEEEECCCCEEEEEC
NISKARQVLEKARTIDFRDGTMLRDLSVAYAKSGQRGMASVVTAERYALTGRLKDAAIHA
CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
KRAVDLLPEGSGPWQRAQDVLIASERAAKRR
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTAPYGDMCFHRVFRRASIPMLIFCLFAQTVSAQGLLRDADLEYGLKQLAAPVLTAAGL
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC
SPSRVKILVVDDSSLNAFVISTDAIFLHYGLINRMSNAAMLQGVIAHEAAHIANGHLTRR
CCCEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
MNNLASARTAAGFGIALAAVAAAAGGGEAGAGVLLGTQSSAINRFLRHTRAEEASADQSA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCHHHH
VRFMRSAGINPAGMSQVLQLFRGQELLAETRQDPYTRSHPLSRDRIRALEGYVAAYGDAP
HHHHHHCCCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
VDNSAADYWFERVKGKLSAYTRAPKWTLRRLNESPYQDVRLLREAIAEHRQSRTKQALAA
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IDKAIALRPNDPFYHDQRGQILFETRNFSAAAAAYGRAVQLAPNDALILSGYGRALLVED
HHHHHEECCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEECCCCEEEEECCCCEEEEEC
NISKARQVLEKARTIDFRDGTMLRDLSVAYAKSGQRGMASVVTAERYALTGRLKDAAIHA
CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
KRAVDLLPEGSGPWQRAQDVLIASERAAKRR
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]