Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

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The map label for this gene is 110679970

Identifier: 110679970

GI number: 110679970

Start: 2631348

End: 2632385

Strand: Direct

Name: 110679970

Synonym: RD1_2759

Alternate gene names: NA

Gene position: 2631348-2632385 (Clockwise)

Preceding gene: 110679969

Following gene: 110679976

Centisome position: 63.67

GC content: 59.73

Gene sequence:

>1038_bases
ATGAATGCACTGATTCCCGAAACAGGCCCCGACCTTACCCCCATCAAAGCCGTCTCTCAGGCCTACGCGGCGTCACTGGA
CCGTGCGACGCCCGACACGGTGGCCGATGTTCTGACGGCCTATCAATCGGACAGGTGCCACTGGTTCGGCATGCACCCCT
TTCACGAACAAACCGGGCCGCGTGATATCGCCAGGACCTTTTGGGCACCGTTCCTGACGTCCTTTTCGCGCCTGCAACGG
CGCGAGGACATCTTTTTTGCCGGGCTGAACGAAATCGACGGCTTCAAGAGCACCTGGACCGCCTCCATGGGTCATTTTCT
GGGGCTGTTCGATGCACCGTTTCTGGGCATTCCGGCCACGGGCAAGATCGCCATGCTGCGCTATGCGGAGTTCAACCGGG
TTGAAAACGGCAAGATCACGCAATCCGCGCTCTTTGTGGATATTTTGCATCTGATGGCGCAAGCGGGAATACATCCGCTG
AATGCGCCGCAAACGGGCGCGCAACTGGTGCAGCCCGGCCCCCGCACGCATGACGGCCTGGTGATGAAACCACAGCCCCA
TGCGGAATCGCAGAAAACGCTGGCGCGGATCAACAATATGATCGGCTCGATAGATCATGCCAATGCCGCCGCAAAGCCCC
CCTCACCGCAGGAAGAACTGCGCGTGGATTGGCAGGATGACATGGTCTGGTGGGGGCCAACCGGGATCGGCGCGACCTAC
ACGATTGACCGCTACATAAAGCAGCACCAAGGCCCCTTTCGCCGCGCGATGGAGGGGCGTGTGCTGAACGGCCATCTGTG
CCGCATGGCCGAGGGGACATACGGCGGCTTTTTTGGCTGGCCAAACCTCACGCTGACCAACAGGAACGGTTTCATGGGCG
TGCCCGGCAACGACATCCGCGCCGATATGCGCGTGGTCGATATCTACCGGCGCGAGGGCGACAAGCTGGTTGAGAACTGG
GTCTTTATCGACATGCTGCATTTTCTCAAGATGCAAGGTGTCGATGTTCTGGCGCAGATCAACGTCCATAGCGTCTGA

Upstream 100 bases:

>100_bases
TCCGCGACCGCAGCGGCATGTGGCAGATTGTCGAAACCGCGCCATAGCTTTTGTCGCTTTTGGTATGGCGAGTGCCTCGC
GCTCTTTCTAAACCAATCAT

Downstream 100 bases:

>100_bases
CGAAACACATGAAACATCACGTAACGCGTTGAAATCATTGATTTCAGGCAGCGTTGCGTACTTCAGGTTTTTCGCATGAC
GCTTTAGCCCACCGCCTCGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MNALIPETGPDLTPIKAVSQAYAASLDRATPDTVADVLTAYQSDRCHWFGMHPFHEQTGPRDIARTFWAPFLTSFSRLQR
REDIFFAGLNEIDGFKSTWTASMGHFLGLFDAPFLGIPATGKIAMLRYAEFNRVENGKITQSALFVDILHLMAQAGIHPL
NAPQTGAQLVQPGPRTHDGLVMKPQPHAESQKTLARINNMIGSIDHANAAAKPPSPQEELRVDWQDDMVWWGPTGIGATY
TIDRYIKQHQGPFRRAMEGRVLNGHLCRMAEGTYGGFFGWPNLTLTNRNGFMGVPGNDIRADMRVVDIYRREGDKLVENW
VFIDMLHFLKMQGVDVLAQINVHSV

Sequences:

>Translated_345_residues
MNALIPETGPDLTPIKAVSQAYAASLDRATPDTVADVLTAYQSDRCHWFGMHPFHEQTGPRDIARTFWAPFLTSFSRLQR
REDIFFAGLNEIDGFKSTWTASMGHFLGLFDAPFLGIPATGKIAMLRYAEFNRVENGKITQSALFVDILHLMAQAGIHPL
NAPQTGAQLVQPGPRTHDGLVMKPQPHAESQKTLARINNMIGSIDHANAAAKPPSPQEELRVDWQDDMVWWGPTGIGATY
TIDRYIKQHQGPFRRAMEGRVLNGHLCRMAEGTYGGFFGWPNLTLTNRNGFMGVPGNDIRADMRVVDIYRREGDKLVENW
VFIDMLHFLKMQGVDVLAQINVHSV
>Mature_345_residues
MNALIPETGPDLTPIKAVSQAYAASLDRATPDTVADVLTAYQSDRCHWFGMHPFHEQTGPRDIARTFWAPFLTSFSRLQR
REDIFFAGLNEIDGFKSTWTASMGHFLGLFDAPFLGIPATGKIAMLRYAEFNRVENGKITQSALFVDILHLMAQAGIHPL
NAPQTGAQLVQPGPRTHDGLVMKPQPHAESQKTLARINNMIGSIDHANAAAKPPSPQEELRVDWQDDMVWWGPTGIGATY
TIDRYIKQHQGPFRRAMEGRVLNGHLCRMAEGTYGGFFGWPNLTLTNRNGFMGVPGNDIRADMRVVDIYRREGDKLVENW
VFIDMLHFLKMQGVDVLAQINVHSV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38584; Mature: 38584

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALIPETGPDLTPIKAVSQAYAASLDRATPDTVADVLTAYQSDRCHWFGMHPFHEQTGP
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEECCCCHHHCCCH
RDIARTFWAPFLTSFSRLQRREDIFFAGLNEIDGFKSTWTASMGHFLGLFDAPFLGIPAT
HHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCC
GKIAMLRYAEFNRVENGKITQSALFVDILHLMAQAGIHPLNAPQTGAQLVQPGPRTHDGL
CCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCE
VMKPQPHAESQKTLARINNMIGSIDHANAAAKPPSPQEELRVDWQDDMVWWGPTGIGATY
EECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCHH
TIDRYIKQHQGPFRRAMEGRVLNGHLCRMAEGTYGGFFGWPNLTLTNRNGFMGVPGNDIR
HHHHHHHHCCCHHHHHHCCCCCCCHHEEECCCCCCCCCCCCCEEEECCCCEECCCCCCHH
ADMRVVDIYRREGDKLVENWVFIDMLHFLKMQGVDVLAQINVHSV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
>Mature Secondary Structure
MNALIPETGPDLTPIKAVSQAYAASLDRATPDTVADVLTAYQSDRCHWFGMHPFHEQTGP
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEECCCCHHHCCCH
RDIARTFWAPFLTSFSRLQRREDIFFAGLNEIDGFKSTWTASMGHFLGLFDAPFLGIPAT
HHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCC
GKIAMLRYAEFNRVENGKITQSALFVDILHLMAQAGIHPLNAPQTGAQLVQPGPRTHDGL
CCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCE
VMKPQPHAESQKTLARINNMIGSIDHANAAAKPPSPQEELRVDWQDDMVWWGPTGIGATY
EECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCHH
TIDRYIKQHQGPFRRAMEGRVLNGHLCRMAEGTYGGFFGWPNLTLTNRNGFMGVPGNDIR
HHHHHHHHCCCHHHHHHCCCCCCCHHEEECCCCCCCCCCCCCEEEECCCCEECCCCCCHH
ADMRVVDIYRREGDKLVENWVFIDMLHFLKMQGVDVLAQINVHSV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA