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The map label for this gene is ydcN [C]

Identifier: 110679954

GI number: 110679954

Start: 2612066

End: 2612689

Strand: Reverse

Name: ydcN [C]

Synonym: RD1_2742

Alternate gene names: 110679954

Gene position: 2612689-2612066 (Counterclockwise)

Preceding gene: 110679958

Following gene: 110679952

Centisome position: 63.21

GC content: 60.74

Gene sequence:

>624_bases
ATGAGCCGGAGCAAGCCAAACAAACTGATCACCATCGCCCGTGAAAACGGCAGCGATGAACCCGTGGCCCCCTTGGATCT
GGGGGTGCGCGTGCGCGAGTTGCGCAAGGCGCGCGACTGGACGCTCGAGCAGGCCGCGACCAAGGCCGGGCTTGCCCGCT
CGACGCTCAGCAAGATCGAAAACGGGCAGATGTCGCCGACCTATGATGCGCTGAAAAAGCTGGCCACGGGCCTGAACATC
TCGATCCCGCAGCTTTTTACGCCCCCGCATGCGGAGCAGGCCAGCGGACGCCTCGCGGTGACCAAATCGGGCGAAGGTGC
AGCACAAGCCACCGTCACTTATGAGCACGAGTTGCTGGCGGATACACTGAGCAAAAAGAAGATGCTGCCGTATCGCACCC
GGGTTCGCGCCCGCAACATGGCGGAGTTTGACGGCTGGGTGCGCCATGATGGGGAAGAGTATCTTTATGTGCTGACCGGG
GTCATTCGTCTTTACACGGAATTCTATGAACCGATCGAGATGCGGCGCGGCGACAGCGCCTATTATGACGCCACGATGGG
CCATAATGTCGTCTCGGTCAGCCCCGAAGACGCCAATATCCTGTGGGTGACATCGCTGGTGTGA

Upstream 100 bases:

>100_bases
GGCGGGAAAGGGCCTGCGTCATAGAGAGATACCATATCGCGGTGCTACCGGGCGGGCAGCGGCGTTGCAAGCCTGCGGGC
TTGCGCATACAAGTGCATAC

Downstream 100 bases:

>100_bases
TCAGTCGTCTTCGAACCACCAGACCTGCGGCATGAAATTCGGCCCGTCCCCGTAAATCGGCAACTGGTCGGGAAAGTGCA
GCCGCGCGTCATGGGCAATC

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator HTH_3 Family; Cro/CI Family Transcriptional Regulator; MerR Family Transcriptional Regulator; Transcriptional Regulator Protein; XRE Family-Like Protein; Helix-Turn-Helix Family; Transcriptional Regulator XRE Family With Cupin Sensor; Helix-Turn-Helix Domain-Containing Protein; Cupin 2 Domain-Containing Protein; Transcriptional Regulator MerR Family; Cupin Sensor Transcriptional Regulator; Transcriptional Regulator Xre Family; Transcription Regulator; Transcriptional Regulatory Protein; Transcriptional Regulator Merr Family; Cupin 2 Conserved Barrel Domain Protein; HTH_3family Transcriptional Regulator; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MSRSKPNKLITIARENGSDEPVAPLDLGVRVRELRKARDWTLEQAATKAGLARSTLSKIENGQMSPTYDALKKLATGLNI
SIPQLFTPPHAEQASGRLAVTKSGEGAAQATVTYEHELLADTLSKKKMLPYRTRVRARNMAEFDGWVRHDGEEYLYVLTG
VIRLYTEFYEPIEMRRGDSAYYDATMGHNVVSVSPEDANILWVTSLV

Sequences:

>Translated_207_residues
MSRSKPNKLITIARENGSDEPVAPLDLGVRVRELRKARDWTLEQAATKAGLARSTLSKIENGQMSPTYDALKKLATGLNI
SIPQLFTPPHAEQASGRLAVTKSGEGAAQATVTYEHELLADTLSKKKMLPYRTRVRARNMAEFDGWVRHDGEEYLYVLTG
VIRLYTEFYEPIEMRRGDSAYYDATMGHNVVSVSPEDANILWVTSLV
>Mature_206_residues
SRSKPNKLITIARENGSDEPVAPLDLGVRVRELRKARDWTLEQAATKAGLARSTLSKIENGQMSPTYDALKKLATGLNIS
IPQLFTPPHAEQASGRLAVTKSGEGAAQATVTYEHELLADTLSKKKMLPYRTRVRARNMAEFDGWVRHDGEEYLYVLTGV
IRLYTEFYEPIEMRRGDSAYYDATMGHNVVSVSPEDANILWVTSLV

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23100; Mature: 22968

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSKPNKLITIARENGSDEPVAPLDLGVRVRELRKARDWTLEQAATKAGLARSTLSKIE
CCCCCCCEEEEEEECCCCCCCCCCHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
NGQMSPTYDALKKLATGLNISIPQLFTPPHAEQASGRLAVTKSGEGAAQATVTYEHELLA
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCEEEEEEHHHHHHH
DTLSKKKMLPYRTRVRARNMAEFDGWVRHDGEEYLYVLTGVIRLYTEFYEPIEMRRGDSA
HHHHHHCCCCHHHHHHHCCHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
YYDATMGHNVVSVSPEDANILWVTSLV
EEECCCCCCEEEECCCCCCEEEEEECC
>Mature Secondary Structure 
SRSKPNKLITIARENGSDEPVAPLDLGVRVRELRKARDWTLEQAATKAGLARSTLSKIE
CCCCCCEEEEEEECCCCCCCCCCHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
NGQMSPTYDALKKLATGLNISIPQLFTPPHAEQASGRLAVTKSGEGAAQATVTYEHELLA
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCEEEEEEHHHHHHH
DTLSKKKMLPYRTRVRARNMAEFDGWVRHDGEEYLYVLTGVIRLYTEFYEPIEMRRGDSA
HHHHHHCCCCHHHHHHHCCHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
YYDATMGHNVVSVSPEDANILWVTSLV
EEECCCCCCEEEECCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA