| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
Click here to switch to the map view.
The map label for this gene is yeiC [C]
Identifier: 110679947
GI number: 110679947
Start: 2605396
End: 2606289
Strand: Direct
Name: yeiC [C]
Synonym: RD1_2733
Alternate gene names: 110679947
Gene position: 2605396-2606289 (Clockwise)
Preceding gene: 110679946
Following gene: 110679948
Centisome position: 63.04
GC content: 64.32
Gene sequence:
>894_bases ATGATGTCCAAGCCTGATATCCTTTGCATCGGCTCCGTTTTATGGGACGTGATCGGCCGCTCGGCCAGCGCCATGCGGCA AGGCTCCGACGTGCCGGGGCGGATCACGCGCCTGCCGGGCGGGGTCGCGATGAACATCGCAATGACGCTGGCTCGATTCG GCCTGACGCCTGCCATCCTGACCACCGTCGGGCAGGACAGCGCAGGGGATGAATTGCTCAGCGCATGCGCGGCGCGCGGC ATTGTGACGGACCTTGTGTATCGCTCCGCTGACCTGCCGACGGATCAGTACATGGCCATCGAGGGGGCAAACGGCCTGAT CGCGGCCATCGCCGATGCCCATTCTCTCGAAGCGGCAGGCGCCAAGATTCTCGCACCGCTCTCGGATGGGCGTGTGGCCT GCGAAAACGCGCCTTTTCAGGGCCGCGTCGCTTTGGATGGCAATCTGACGCTGACCTTGTTGAGCGAGATCGCGCAAAGC CCGCTGTTCTCCTGCGCCGATCTGCGCGTCGCGCCCGCCTCCCCCGGCAAGGCCGAGCGGTTGTTTCCTTTCGTCAAACA GAGCCGCGGCACGCTTTACGTCAATCTTGAAGAGGCTGGATTGCTGTGTAACCAAACATTCAAAACGTCACGCGCTGCCG CAGAAAACCTGTTGGCACTGGGCGCCGCCCGGGTCTTGGTGACCGATGGTGGTGCCGATGCGAGCGAAGGGCGACCGGAT GGGCTGCTGACGCAGACGCCGCCACAGGTGCTGGTTGCGCGCGTGACCGGTGCGGGCGATACCTTCATGGCCGCCCATAT CGCATCTGAAGCGCAGGGGCTGGACCCTGCCGCTGCCCTGGACCGGGCCCTCAAGGCCGCCGCAACCTATGTATCCGGAG AAACACCCTCATGA
Upstream 100 bases:
>100_bases CTGGGAAACCCTGTGGGCGGCTTTGACCTTTTCCGTCCCTTCCCGATGAAGCTGCGCAGCAGGGGCTTGATCCTTTGCGC CTTCCCCGTCACAAGACCGC
Downstream 100 bases:
>100_bases CCAACCTACCCTTGCGCCATAGTGCCGAAGTGGCCGCCGCCAAAGCCGCCGGACGCCCGATCGTGGCGCTGGAAAGCACC ATCATCACCCACGGCATGCC
Product: pfkB family kinase, putative
Products: NA
Alternate protein names: Kinase PfkB Family; PfkB Domain Protein; PfkB Family Kinase; Carbohydrate Kinase PfkB Family; Carbohydrate Kinase; Kinase PfkB Family Protein; Carbohydrate/Purine Kinase Family Protein
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MMSKPDILCIGSVLWDVIGRSASAMRQGSDVPGRITRLPGGVAMNIAMTLARFGLTPAILTTVGQDSAGDELLSACAARG IVTDLVYRSADLPTDQYMAIEGANGLIAAIADAHSLEAAGAKILAPLSDGRVACENAPFQGRVALDGNLTLTLLSEIAQS PLFSCADLRVAPASPGKAERLFPFVKQSRGTLYVNLEEAGLLCNQTFKTSRAAAENLLALGAARVLVTDGGADASEGRPD GLLTQTPPQVLVARVTGAGDTFMAAHIASEAQGLDPAAALDRALKAAATYVSGETPS
Sequences:
>Translated_297_residues MMSKPDILCIGSVLWDVIGRSASAMRQGSDVPGRITRLPGGVAMNIAMTLARFGLTPAILTTVGQDSAGDELLSACAARG IVTDLVYRSADLPTDQYMAIEGANGLIAAIADAHSLEAAGAKILAPLSDGRVACENAPFQGRVALDGNLTLTLLSEIAQS PLFSCADLRVAPASPGKAERLFPFVKQSRGTLYVNLEEAGLLCNQTFKTSRAAAENLLALGAARVLVTDGGADASEGRPD GLLTQTPPQVLVARVTGAGDTFMAAHIASEAQGLDPAAALDRALKAAATYVSGETPS >Mature_297_residues MMSKPDILCIGSVLWDVIGRSASAMRQGSDVPGRITRLPGGVAMNIAMTLARFGLTPAILTTVGQDSAGDELLSACAARG IVTDLVYRSADLPTDQYMAIEGANGLIAAIADAHSLEAAGAKILAPLSDGRVACENAPFQGRVALDGNLTLTLLSEIAQS PLFSCADLRVAPASPGKAERLFPFVKQSRGTLYVNLEEAGLLCNQTFKTSRAAAENLLALGAARVLVTDGGADASEGRPD GLLTQTPPQVLVARVTGAGDTFMAAHIASEAQGLDPAAALDRALKAAATYVSGETPS
Specific function: Unknown
COG id: COG0524
COG function: function code G; Sugar kinases, ribokinase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788491, Length=277, Percent_Identity=28.158844765343, Blast_Score=62, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30489; Mature: 30489
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: PS00583 PFKB_KINASES_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSKPDILCIGSVLWDVIGRSASAMRQGSDVPGRITRLPGGVAMNIAMTLARFGLTPAIL CCCCCCEEEHHHHHHHHHCCCHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCHHHH TTVGQDSAGDELLSACAARGIVTDLVYRSADLPTDQYMAIEGANGLIAAIADAHSLEAAG HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCHHHHHHCC AKILAPLSDGRVACENAPFQGRVALDGNLTLTLLSEIAQSPLFSCADLRVAPASPGKAER CEEEEECCCCCEEECCCCCCCEEEECCCCHHHHHHHHHHCCCCCHHCCEECCCCCCCHHH LFPFVKQSRGTLYVNLEEAGLLCNQTFKTSRAAAENLLALGAARVLVTDGGADASEGRPD HHHHHHCCCCEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCC GLLTQTPPQVLVARVTGAGDTFMAAHIASEAQGLDPAAALDRALKAAATYVSGETPS CCCCCCCHHHEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MMSKPDILCIGSVLWDVIGRSASAMRQGSDVPGRITRLPGGVAMNIAMTLARFGLTPAIL CCCCCCEEEHHHHHHHHHCCCHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCHHHH TTVGQDSAGDELLSACAARGIVTDLVYRSADLPTDQYMAIEGANGLIAAIADAHSLEAAG HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCHHHHHHCC AKILAPLSDGRVACENAPFQGRVALDGNLTLTLLSEIAQSPLFSCADLRVAPASPGKAER CEEEEECCCCCEEECCCCCCCEEEECCCCHHHHHHHHHHCCCCCHHCCEECCCCCCCHHH LFPFVKQSRGTLYVNLEEAGLLCNQTFKTSRAAAENLLALGAARVLVTDGGADASEGRPD HHHHHHCCCCEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCC GLLTQTPPQVLVARVTGAGDTFMAAHIASEAQGLDPAAALDRALKAAATYVSGETPS CCCCCCCHHHEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA