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The map label for this gene is psuG

Identifier: 110679948

GI number: 110679948

Start: 2606286

End: 2607218

Strand: Direct

Name: psuG

Synonym: RD1_2734

Alternate gene names: 110679948

Gene position: 2606286-2607218 (Clockwise)

Preceding gene: 110679947

Following gene: 110679949

Centisome position: 63.06

GC content: 64.31

Gene sequence:

>933_bases
ATGACCAACCTACCCTTGCGCCATAGTGCCGAAGTGGCCGCCGCCAAAGCCGCCGGACGCCCGATCGTGGCGCTGGAAAG
CACCATCATCACCCACGGCATGCCCTATCCCCAAAACCTTGAGGTGGCCCGTCAGGTCGAGGATGATTTGCGCGCCGCAG
GGGTAACACCCGCCACCATCGCCGTGATGGACGGTACGCTGCACATCGGGCTTGAGGCGCATCAACTCGAGGCGCTTGCG
CAGGCCAAGGGGGTCGCCAAACTCTCGCGCGCCGACATCGCCGCCTGCATGGCCACGGGCGGCACCGGGGCGACGACCGT
TTCAGCGACGATGATCGCGGCCCATCTTGCGGGCATATCGGTTTTTGCAACGGGCGGTATCGGCGGGGTCCATCGCGGCG
CGGAGTCCAGTTTTGACGTTTCTGCCGACCTGCTGGAGCTTGCACAAACCCCCGTGACCGTCGTGGCCGCCGGGGCCAAG
GCCATTCTGGATGTGGCCAAAACACTGGAAGTGCTGGAAACACAGGGCGTGCCAGTCATCACCGTGGGTCAGGACAGTTT
CCCCGCCTTCTGGAGCGCGGAATCCGTTTTCAAATCGCCCCTGCGCATGGATGATCCCGTCGGGATCGCAGCGGCCCATC
AGATGCGCGTCGATCTCGGCCTGCCCGGCGGTCAACTGGTGGCCAATCCCATTCCGCACACGGATGAAATCCCGGCAACC
GAACTCGCGCCGATCATCGCCACAGCGCAGGCGGATGCCGAGAAGCACGGCATCAAGGGCAAGGCCGTGACCCCGTATCT
GCTGCAGCGCATCTATGAGTTGACGCAAGGACGGTCCCTGACGGCAAACATCGCGCTGGTGCGCAATAACGCGCGGCTGG
CCGGGGCGATCGCCCAAGCCTTGATCGCCAATGCCCGCATTGCGGGAAAGTGA

Upstream 100 bases:

>100_bases
CCGCCCATATCGCATCTGAAGCGCAGGGGCTGGACCCTGCCGCTGCCCTGGACCGGGCCCTCAAGGCCGCCGCAACCTAT
GTATCCGGAGAAACACCCTC

Downstream 100 bases:

>100_bases
GCCATTGCGCGGGCAGCCCCCATTGTTAACCGCTGCCAAACCCCCTAACTATCGCGAGTGCCTTGCAAAGACGGACACTG
AATGAACACGCCCTTCGACC

Product: hypothetical protein

Products: NA

Alternate protein names: PsiMP glycosidase

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MTNLPLRHSAEVAAAKAAGRPIVALESTIITHGMPYPQNLEVARQVEDDLRAAGVTPATIAVMDGTLHIGLEAHQLEALA
QAKGVAKLSRADIAACMATGGTGATTVSATMIAAHLAGISVFATGGIGGVHRGAESSFDVSADLLELAQTPVTVVAAGAK
AILDVAKTLEVLETQGVPVITVGQDSFPAFWSAESVFKSPLRMDDPVGIAAAHQMRVDLGLPGGQLVANPIPHTDEIPAT
ELAPIIATAQADAEKHGIKGKAVTPYLLQRIYELTQGRSLTANIALVRNNARLAGAIAQALIANARIAGK

Sequences:

>Translated_310_residues
MTNLPLRHSAEVAAAKAAGRPIVALESTIITHGMPYPQNLEVARQVEDDLRAAGVTPATIAVMDGTLHIGLEAHQLEALA
QAKGVAKLSRADIAACMATGGTGATTVSATMIAAHLAGISVFATGGIGGVHRGAESSFDVSADLLELAQTPVTVVAAGAK
AILDVAKTLEVLETQGVPVITVGQDSFPAFWSAESVFKSPLRMDDPVGIAAAHQMRVDLGLPGGQLVANPIPHTDEIPAT
ELAPIIATAQADAEKHGIKGKAVTPYLLQRIYELTQGRSLTANIALVRNNARLAGAIAQALIANARIAGK
>Mature_309_residues
TNLPLRHSAEVAAAKAAGRPIVALESTIITHGMPYPQNLEVARQVEDDLRAAGVTPATIAVMDGTLHIGLEAHQLEALAQ
AKGVAKLSRADIAACMATGGTGATTVSATMIAAHLAGISVFATGGIGGVHRGAESSFDVSADLLELAQTPVTVVAAGAKA
ILDVAKTLEVLETQGVPVITVGQDSFPAFWSAESVFKSPLRMDDPVGIAAAHQMRVDLGLPGGQLVANPIPHTDEIPATE
LAPIIATAQADAEKHGIKGKAVTPYLLQRIYELTQGRSLTANIALVRNNARLAGAIAQALIANARIAGK

Specific function: Catalyzes the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil

COG id: COG2313

COG function: function code Q; Uncharacterized enzyme involved in pigment biosynthesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pseudouridine-5'-phosphate glycosidase family

Homologues:

Organism=Escherichia coli, GI1788490, Length=305, Percent_Identity=50.8196721311475, Blast_Score=272, Evalue=2e-74,
Organism=Caenorhabditis elegans, GI25147470, Length=297, Percent_Identity=47.4747474747475, Blast_Score=265, Evalue=3e-71,
Organism=Drosophila melanogaster, GI24580669, Length=297, Percent_Identity=45.4545454545455, Blast_Score=235, Evalue=3e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSUG_ROSDO (Q165S4)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_682955.1
- ProteinModelPortal:   Q165S4
- SMR:   Q165S4
- STRING:   Q165S4
- GeneID:   4196089
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_2734
- NMPDR:   fig|375451.6.peg.2535
- eggNOG:   COG2313
- HOGENOM:   HBG308892
- OMA:   PATIAVM
- PhylomeDB:   Q165S4
- ProtClustDB:   CLSK862888
- BioCyc:   RDEN375451:RD1_2734-MONOMER
- HAMAP:   MF_01876
- InterPro:   IPR022830
- InterPro:   IPR007342
- PANTHER:   PTHR10584:SF1

Pfam domain/function: PF04227 Indigoidine_A; SSF110581 Indigdn_synthA

EC number: NA

Molecular weight: Translated: 31819; Mature: 31688

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNLPLRHSAEVAAAKAAGRPIVALESTIITHGMPYPQNLEVARQVEDDLRAAGVTPATI
CCCCCCCCCHHHHHHHHCCCCEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
AVMDGTLHIGLEAHQLEALAQAKGVAKLSRADIAACMATGGTGATTVSATMIAAHLAGIS
EEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCEE
VFATGGIGGVHRGAESSFDVSADLLELAQTPVTVVAAGAKAILDVAKTLEVLETQGVPVI
EEEECCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEE
TVGQDSFPAFWSAESVFKSPLRMDDPVGIAAAHQMRVDLGLPGGQLVANPIPHTDEIPAT
EECCCCCCCCCCHHHHHHCCCCCCCCCCEEEHEEEEEEECCCCCCEEECCCCCCCCCCHH
ELAPIIATAQADAEKHGIKGKAVTPYLLQRIYELTQGRSLTANIALVRNNARLAGAIAQA
HHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHH
LIANARIAGK
HHHCCCCCCC
>Mature Secondary Structure 
TNLPLRHSAEVAAAKAAGRPIVALESTIITHGMPYPQNLEVARQVEDDLRAAGVTPATI
CCCCCCCCHHHHHHHHCCCCEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
AVMDGTLHIGLEAHQLEALAQAKGVAKLSRADIAACMATGGTGATTVSATMIAAHLAGIS
EEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCEE
VFATGGIGGVHRGAESSFDVSADLLELAQTPVTVVAAGAKAILDVAKTLEVLETQGVPVI
EEEECCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEE
TVGQDSFPAFWSAESVFKSPLRMDDPVGIAAAHQMRVDLGLPGGQLVANPIPHTDEIPAT
EECCCCCCCCCCHHHHHHCCCCCCCCCCEEEHEEEEEEECCCCCCEEECCCCCCCCCCHH
ELAPIIATAQADAEKHGIKGKAVTPYLLQRIYELTQGRSLTANIALVRNNARLAGAIAQA
HHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHH
LIANARIAGK
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA