Click here to switch to the map view.

The map label for this gene is sufB [C]

Identifier: 110679916

GI number: 110679916

Start: 2568490

End: 2570028

Strand: Reverse

Name: sufB [C]

Synonym: RD1_2696

Alternate gene names: 110679916

Gene position: 2570028-2568490 (Counterclockwise)

Preceding gene: 110679917

Following gene: 110679915

Centisome position: 62.18

GC content: 57.89

Gene sequence:

>1539_bases
ATGACAGCATTAGACCAGCCGATCACCGAGGATATTCAGGTCAAAGAAGGCGTTGACCAGGACACAGTTGACGCCGTGCG
CGAAGTGGGCGGCAAATATAAGCACGGCTGGTCCACCGACATTGAAATGGAATACGCGCCAAAGGGCCTCAGCCCGGAGA
TCGTGCGCCTGATTTCCGAAAAGAACGAAGAACCCGAATGGATGCTGGAATGGCGTCTGGCCGCTTACGAGCGCTGGTTG
CAAAAGTCCGAGCCCAAATGGGCCATGGTGGATTATCCGGAAATCGATTTTCAGGATCAATACTACTATGCGCGGCCCAA
ATCCATGGAAGTCAAGCCGAAGTCGCTGGATGACGTCGATCCCAAGCTGCTGGAAACATATCAAAAGCTGGGCATTCCGC
TGAAGGAACAGATGATCCTCGCCGGTGTCGAGGGCGCTGAGGAACTGACCGATGAGCCGCGCAAGGTGGCGGTGGATGCT
GTGTTTGATTCCGTCTCGCTCGGCACGACATTCCGGGATGAGCTGATGAAGGCGGGCGTAATCTTCTGTTCGATTTCCGA
GGCGATCAAGGATCACCCCGAGCTGGTCAAGAAATACCTCGGCTCGGTCGTGCCGGTGTCTGACAACTACTACGCGACGC
TCAATTCGGCGGTGTTTTCCGACGGCTCTTTTGTGTATGTGCCGCCCGGCGTGCGCTGCCCGATGGAACTGTCGACCTAT
TTCCGCATCAATGCGGAAAACACCGGTCAATTCGAACGCACGCTGATCATCGCGGACAAGGGGTCCTATGTCTCCTACCT
CGAGGGCTGCACCGCGCCGCAGCGCGACATCGCGCAGCTTCACGCCGCTGTGGTGGAGATCATTGTCGAGGAAGATGCGG
AGGTGAAATACTCCACCGTCCAGAACTGGTACCCGGGCGACGAAGAGGGCAAGGGCGGCATCTATAACTTCGTGACAAAA
CGTGCCGATTGCCGGGGGGATCGCGCCAAGGTGATGTGGACGCAGGTGGAGACGGGTTCGGCCGTCACCTGGAAATATCC
GTCGTGCATTCTGCGCGGCGACGACAGCCAGGGCGAATTCTATTCGATTGCCATCGCCAACAACATGCAGCAAGCCGATA
CCGGCACCAAGATGATCCATCTGGGCAAACGCACCAAGTCGCGCATCGTGTCCAAGGGTATTTCCGCAGGCAAGGCGCAG
AATACCTATCGCGGGCTGGTGTCGATGCACCCCAAAGCGAAGGATTCGCGCAACTATACCCAGTGCGACAGCCTGCTGAT
CGGCGACAAATGCGGCGCACACACAGTGCCCTACATCGAGGTCAAGAACAACTCGAGCCGAGTGGAGCACGAAGCGACGA
CCTCCAAGGTGGACGACGATCAGCTGTTCTACTGCCGCTCGCGCGGGATGGACGAAGAAGAGGCCGTGGCGCTGGTGGTG
AACGGGTTCTGCAAGGACGTGCTGCAAGCGCTGCCGATGGAGTTTGCCATGGAGGCGCAGCAATTGGTGGCGATTTCGCT
TGAAGGGTCAGTGGGCTGA

Upstream 100 bases:

>100_bases
TCTGGAGACGACGAAAACCGAGGTCCTGCAGTTTGCACAGGCCTGGCTTGAAAAAGAAAAGAAATTTCGCGCCCGCGCGG
CGTGAGCACTGGAGGATACG

Downstream 100 bases:

>100_bases
TCGGCGCGCCGCACCGACGCAACACCGACGTCGTACCGACGTGAAACCGATAGGCCTCAATCTGCCAACCGAGCACCACG
GGACACCAGATGATTTTGAC

Product: cysteine desulfurase activator complex subunit SufB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 512; Mature: 511

Protein sequence:

>512_residues
MTALDQPITEDIQVKEGVDQDTVDAVREVGGKYKHGWSTDIEMEYAPKGLSPEIVRLISEKNEEPEWMLEWRLAAYERWL
QKSEPKWAMVDYPEIDFQDQYYYARPKSMEVKPKSLDDVDPKLLETYQKLGIPLKEQMILAGVEGAEELTDEPRKVAVDA
VFDSVSLGTTFRDELMKAGVIFCSISEAIKDHPELVKKYLGSVVPVSDNYYATLNSAVFSDGSFVYVPPGVRCPMELSTY
FRINAENTGQFERTLIIADKGSYVSYLEGCTAPQRDIAQLHAAVVEIIVEEDAEVKYSTVQNWYPGDEEGKGGIYNFVTK
RADCRGDRAKVMWTQVETGSAVTWKYPSCILRGDDSQGEFYSIAIANNMQQADTGTKMIHLGKRTKSRIVSKGISAGKAQ
NTYRGLVSMHPKAKDSRNYTQCDSLLIGDKCGAHTVPYIEVKNNSSRVEHEATTSKVDDDQLFYCRSRGMDEEEAVALVV
NGFCKDVLQALPMEFAMEAQQLVAISLEGSVG

Sequences:

>Translated_512_residues
MTALDQPITEDIQVKEGVDQDTVDAVREVGGKYKHGWSTDIEMEYAPKGLSPEIVRLISEKNEEPEWMLEWRLAAYERWL
QKSEPKWAMVDYPEIDFQDQYYYARPKSMEVKPKSLDDVDPKLLETYQKLGIPLKEQMILAGVEGAEELTDEPRKVAVDA
VFDSVSLGTTFRDELMKAGVIFCSISEAIKDHPELVKKYLGSVVPVSDNYYATLNSAVFSDGSFVYVPPGVRCPMELSTY
FRINAENTGQFERTLIIADKGSYVSYLEGCTAPQRDIAQLHAAVVEIIVEEDAEVKYSTVQNWYPGDEEGKGGIYNFVTK
RADCRGDRAKVMWTQVETGSAVTWKYPSCILRGDDSQGEFYSIAIANNMQQADTGTKMIHLGKRTKSRIVSKGISAGKAQ
NTYRGLVSMHPKAKDSRNYTQCDSLLIGDKCGAHTVPYIEVKNNSSRVEHEATTSKVDDDQLFYCRSRGMDEEEAVALVV
NGFCKDVLQALPMEFAMEAQQLVAISLEGSVG
>Mature_511_residues
TALDQPITEDIQVKEGVDQDTVDAVREVGGKYKHGWSTDIEMEYAPKGLSPEIVRLISEKNEEPEWMLEWRLAAYERWLQ
KSEPKWAMVDYPEIDFQDQYYYARPKSMEVKPKSLDDVDPKLLETYQKLGIPLKEQMILAGVEGAEELTDEPRKVAVDAV
FDSVSLGTTFRDELMKAGVIFCSISEAIKDHPELVKKYLGSVVPVSDNYYATLNSAVFSDGSFVYVPPGVRCPMELSTYF
RINAENTGQFERTLIIADKGSYVSYLEGCTAPQRDIAQLHAAVVEIIVEEDAEVKYSTVQNWYPGDEEGKGGIYNFVTKR
ADCRGDRAKVMWTQVETGSAVTWKYPSCILRGDDSQGEFYSIAIANNMQQADTGTKMIHLGKRTKSRIVSKGISAGKAQN
TYRGLVSMHPKAKDSRNYTQCDSLLIGDKCGAHTVPYIEVKNNSSRVEHEATTSKVDDDQLFYCRSRGMDEEEAVALVVN
GFCKDVLQALPMEFAMEAQQLVAISLEGSVG

Specific function: Unknown

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=493, Percent_Identity=58.0121703853955, Blast_Score=620, Evalue=1e-179,
Organism=Escherichia coli, GI1787971, Length=153, Percent_Identity=28.1045751633987, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010231
- InterPro:   IPR000825 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 57318; Mature: 57187

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALDQPITEDIQVKEGVDQDTVDAVREVGGKYKHGWSTDIEMEYAPKGLSPEIVRLISE
CCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
KNEEPEWMLEWRLAAYERWLQKSEPKWAMVDYPEIDFQDQYYYARPKSMEVKPKSLDDVD
CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCC
PKLLETYQKLGIPLKEQMILAGVEGAEELTDEPRKVAVDAVFDSVSLGTTFRDELMKAGV
HHHHHHHHHHCCCHHHHHEEECCCCHHHHCCCCHHEEHHHHHHHHHCCCHHHHHHHHCCE
IFCSISEAIKDHPELVKKYLGSVVPVSDNYYATLNSAVFSDGSFVYVPPGVRCPMELSTY
EEEEHHHHHCCCHHHHHHHHCCEEECCCCEEEEECHHEECCCCEEEECCCCCCCCEEEEE
FRINAENTGQFERTLIIADKGSYVSYLEGCTAPQRDIAQLHAAVVEIIVEEDAEVKYSTV
EEEECCCCCCEEEEEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHH
QNWYPGDEEGKGGIYNFVTKRADCRGDRAKVMWTQVETGSAVTWKYPSCILRGDDSQGEF
HCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEECCCEEEECCCCCCCE
YSIAIANNMQQADTGTKMIHLGKRTKSRIVSKGISAGKAQNTYRGLVSMHPKAKDSRNYT
EEEEEECCCHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCHH
QCDSLLIGDKCGAHTVPYIEVKNNSSRVEHEATTSKVDDDQLFYCRSRGMDEEEAVALVV
HHHCEEECCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCCEEEEHHCCCCHHHHHHHHH
NGFCKDVLQALPMEFAMEAQQLVAISLEGSVG
HHHHHHHHHHCCHHHHHCCCCEEEEEECCCCC
>Mature Secondary Structure 
TALDQPITEDIQVKEGVDQDTVDAVREVGGKYKHGWSTDIEMEYAPKGLSPEIVRLISE
CCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
KNEEPEWMLEWRLAAYERWLQKSEPKWAMVDYPEIDFQDQYYYARPKSMEVKPKSLDDVD
CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCC
PKLLETYQKLGIPLKEQMILAGVEGAEELTDEPRKVAVDAVFDSVSLGTTFRDELMKAGV
HHHHHHHHHHCCCHHHHHEEECCCCHHHHCCCCHHEEHHHHHHHHHCCCHHHHHHHHCCE
IFCSISEAIKDHPELVKKYLGSVVPVSDNYYATLNSAVFSDGSFVYVPPGVRCPMELSTY
EEEEHHHHHCCCHHHHHHHHCCEEECCCCEEEEECHHEECCCCEEEECCCCCCCCEEEEE
FRINAENTGQFERTLIIADKGSYVSYLEGCTAPQRDIAQLHAAVVEIIVEEDAEVKYSTV
EEEECCCCCCEEEEEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHH
QNWYPGDEEGKGGIYNFVTKRADCRGDRAKVMWTQVETGSAVTWKYPSCILRGDDSQGEF
HCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEECCCEEEECCCCCCCE
YSIAIANNMQQADTGTKMIHLGKRTKSRIVSKGISAGKAQNTYRGLVSMHPKAKDSRNYT
EEEEEECCCHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCHH
QCDSLLIGDKCGAHTVPYIEVKNNSSRVEHEATTSKVDDDQLFYCRSRGMDEEEAVALVV
HHHCEEECCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCCEEEEHHCCCCHHHHHHHHH
NGFCKDVLQALPMEFAMEAQQLVAISLEGSVG
HHHHHHHHHHCCHHHHHCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]