BacMap

Definition	Roseobacter denitrificans OCh 114, complete genome.
Accession	NC_008209
Length	4,133,097

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The map label for this gene is livG [H]

Identifier: 110679857

GI number: 110679857

Start: 2510722

End: 2511519

Strand: Reverse

Name: livG [H]

Synonym: RD1_2630

Alternate gene names: 110679857

Gene position: 2511519-2510722 (Counterclockwise)

Preceding gene: 110679858

Following gene: 110679856

Centisome position: 60.77

GC content: 55.26

Gene sequence:

>798_bases
ATGCAAGGCACAGGCATGATCGTCGTTCAGGACCTTCATAAACACTTCGGCGGTTTTCGCGCTGTGGATGGGGCATCGCT
GGAAATTGCGCAGGGGTCGATCACGGGGTTGATCGGGCCAAACGGTGCTGGAAAAACAACACTTTTCAATGTGATCGCGG
GCGTTCTTAAACCAACTTCGGGCCGTGTGTTCATGGCGGGCGAAGACATCACGGGCCTGCCGCCACATGATCTGTTTCAC
AAGGGGTTGCTGCGCACCTTTCAGATTGCGCATGAGTTTTCATCCATGTCCTGTCGCGAAAACCTCATGATGGTCCCCGG
TGATCAGGCGGGTGAGACGCTTTGGAACACATGGTTTGGCCGCAAACGCATCGCCGATCAGGAACGCGCGCTGCGCGCCA
AGGCCGATGAGGTTCTGGAGTTTCTGACAATCGAACATCTGGCCGATCACAAGGCTGGACAGATTTCGGGTGGGCAGAAA
AAACTGCTGGAACTGGGCCGCACAATGATGGTGGATGCGCGGATCGTGTTCTTGGATGAGGTTGGCGCGGGGGTCAATCG
CACGCTGCTCAATACCATCGGAGACGCGATTTTGCGCCTCAACAAGGAGCGCGGATATACATTCGTCGTGATCGAACACG
ACATGGATTTCATCGGGCGTTTGTGTGATCCGGTCATCTGCATGGCCGAGGGTAAAGTGCTGGCCCAAGGGACGTTGCCC
GAGATCAAGGCGAATGAGCAGGTTATTGAGGCGTACCTCGGTACAGGCCTGAAAAACAAGGATAAAATAGGCGCATGA

Upstream 100 bases:

>100_bases
AACGTCACCATCGGCTTCAAGTAAAAATCCGTTTGATATGAAAACAGCCCGGTGTCGCTGATGCCGGGCTGTTTTTGAAC
GCTGCAGGAAAGCTGGGAAG

Downstream 100 bases:

>100_bases
GCGGTGATCCTTACGATGCACGCGGCAATCGCGACCTTTCCTTGGGCAATGCTGCGGGTATGGGCAAGGCCTACCCGGTG
AAAAAGGGCGGCACAGCACA

Product: branched-chain amino acid ABC transporter, ATP-binding protein

Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MQGTGMIVVQDLHKHFGGFRAVDGASLEIAQGSITGLIGPNGAGKTTLFNVIAGVLKPTSGRVFMAGEDITGLPPHDLFH
KGLLRTFQIAHEFSSMSCRENLMMVPGDQAGETLWNTWFGRKRIADQERALRAKADEVLEFLTIEHLADHKAGQISGGQK
KLLELGRTMMVDARIVFLDEVGAGVNRTLLNTIGDAILRLNKERGYTFVVIEHDMDFIGRLCDPVICMAEGKVLAQGTLP
EIKANEQVIEAYLGTGLKNKDKIGA

Sequences:

>Translated_265_residues
MQGTGMIVVQDLHKHFGGFRAVDGASLEIAQGSITGLIGPNGAGKTTLFNVIAGVLKPTSGRVFMAGEDITGLPPHDLFH
KGLLRTFQIAHEFSSMSCRENLMMVPGDQAGETLWNTWFGRKRIADQERALRAKADEVLEFLTIEHLADHKAGQISGGQK
KLLELGRTMMVDARIVFLDEVGAGVNRTLLNTIGDAILRLNKERGYTFVVIEHDMDFIGRLCDPVICMAEGKVLAQGTLP
EIKANEQVIEAYLGTGLKNKDKIGA
>Mature_265_residues
MQGTGMIVVQDLHKHFGGFRAVDGASLEIAQGSITGLIGPNGAGKTTLFNVIAGVLKPTSGRVFMAGEDITGLPPHDLFH
KGLLRTFQIAHEFSSMSCRENLMMVPGDQAGETLWNTWFGRKRIADQERALRAKADEVLEFLTIEHLADHKAGQISGGQK
KLLELGRTMMVDARIVFLDEVGAGVNRTLLNTIGDAILRLNKERGYTFVVIEHDMDFIGRLCDPVICMAEGKVLAQGTLP
EIKANEQVIEAYLGTGLKNKDKIGA

Specific function: Probable component of a branched-chain amino-acid transport system [H]

COG id: COG0411

COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI105990541, Length=235, Percent_Identity=28.936170212766, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI27881501, Length=234, Percent_Identity=26.4957264957265, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI30795238, Length=234, Percent_Identity=26.4957264957265, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI21536376, Length=239, Percent_Identity=26.7782426778243, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI45446740, Length=218, Percent_Identity=26.605504587156, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI47078218, Length=218, Percent_Identity=26.605504587156, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI31657092, Length=246, Percent_Identity=26.4227642276423, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI116734710, Length=245, Percent_Identity=26.9387755102041, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI150417984, Length=247, Percent_Identity=26.7206477732794, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI27477115, Length=244, Percent_Identity=26.6393442622951, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI27436953, Length=246, Percent_Identity=24.390243902439, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI153792144, Length=179, Percent_Identity=25.6983240223464, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI171184400, Length=212, Percent_Identity=27.8301886792453, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI255708477, Length=235, Percent_Identity=25.531914893617, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI27262624, Length=221, Percent_Identity=26.2443438914027, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI27262626, Length=221, Percent_Identity=26.2443438914027, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1789864, Length=249, Percent_Identity=32.9317269076305, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1789593, Length=252, Percent_Identity=30.1587301587302, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI87081709, Length=238, Percent_Identity=27.3109243697479, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1788761, Length=231, Percent_Identity=29.4372294372294, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082268, Length=250, Percent_Identity=31.6, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787370, Length=231, Percent_Identity=26.4069264069264, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1786803, Length=238, Percent_Identity=27.7310924369748, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1790739, Length=237, Percent_Identity=30.379746835443, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI87081791, Length=239, Percent_Identity=25.5230125523013, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1790467, Length=231, Percent_Identity=26.8398268398268, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87081782, Length=248, Percent_Identity=30.6451612903226, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788450, Length=234, Percent_Identity=28.6324786324786, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1790525, Length=258, Percent_Identity=26.7441860465116, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1786398, Length=235, Percent_Identity=23.8297872340426, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788472, Length=262, Percent_Identity=25.1908396946565, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1790544, Length=256, Percent_Identity=25.78125, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786345, Length=227, Percent_Identity=26.431718061674, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789032, Length=224, Percent_Identity=27.6785714285714, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787712, Length=226, Percent_Identity=26.5486725663717, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790190, Length=258, Percent_Identity=23.2558139534884, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI87081834, Length=217, Percent_Identity=24.4239631336406, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1789962, Length=246, Percent_Identity=25.609756097561, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1786253, Length=231, Percent_Identity=26.8398268398268, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1787029, Length=239, Percent_Identity=26.7782426778243, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787500, Length=227, Percent_Identity=25.1101321585903, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1788225, Length=262, Percent_Identity=26.7175572519084, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1787105, Length=240, Percent_Identity=25.8333333333333, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789672, Length=247, Percent_Identity=24.2914979757085, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786703, Length=237, Percent_Identity=25.7383966244726, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787089, Length=228, Percent_Identity=26.3157894736842, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786319, Length=237, Percent_Identity=27.0042194092827, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786698, Length=227, Percent_Identity=22.4669603524229, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787758, Length=247, Percent_Identity=24.6963562753036, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787792, Length=246, Percent_Identity=23.9837398373984, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788210, Length=253, Percent_Identity=22.5296442687747, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI48994997, Length=234, Percent_Identity=25.2136752136752, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786872, Length=235, Percent_Identity=25.9574468085106, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082267, Length=246, Percent_Identity=23.5772357723577, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789991, Length=229, Percent_Identity=23.1441048034935, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788897, Length=222, Percent_Identity=24.7747747747748, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787547, Length=253, Percent_Identity=25.296442687747, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI48994943, Length=239, Percent_Identity=25.1046025104602, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1789891, Length=230, Percent_Identity=23.9130434782609, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788644, Length=265, Percent_Identity=27.1698113207547, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI48995001, Length=223, Percent_Identity=23.3183856502242, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787972, Length=251, Percent_Identity=25.0996015936255, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1786981, Length=219, Percent_Identity=28.310502283105, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787759, Length=250, Percent_Identity=25.2, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787112, Length=227, Percent_Identity=24.6696035242291, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789873, Length=224, Percent_Identity=23.2142857142857, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI48994883, Length=244, Percent_Identity=24.1803278688525, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787164, Length=232, Percent_Identity=25, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=252, Percent_Identity=29.3650793650794, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71983516, Length=252, Percent_Identity=29.3650793650794, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI71983510, Length=252, Percent_Identity=29.3650793650794, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17510237, Length=254, Percent_Identity=27.1653543307087, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI115533608, Length=225, Percent_Identity=29.7777777777778, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17565938, Length=251, Percent_Identity=26.2948207171315, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71992285, Length=251, Percent_Identity=24.3027888446215, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=219, Percent_Identity=29.6803652968037, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17543740, Length=230, Percent_Identity=26.5217391304348, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115534520, Length=242, Percent_Identity=25.2066115702479, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=224, Percent_Identity=25.4464285714286, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193208177, Length=223, Percent_Identity=24.2152466367713, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI221512771, Length=240, Percent_Identity=30.8333333333333, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI28574150, Length=254, Percent_Identity=28.3464566929134, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI116007328, Length=254, Percent_Identity=28.3464566929134, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI116007184, Length=232, Percent_Identity=26.2931034482759, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI221500365, Length=232, Percent_Identity=26.2931034482759, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28573571, Length=243, Percent_Identity=20.9876543209877, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28573573, Length=232, Percent_Identity=20.6896551724138, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 28841; Mature: 28841

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGTGMIVVQDLHKHFGGFRAVDGASLEIAQGSITGLIGPNGAGKTTLFNVIAGVLKPTS
CCCCCEEEEHHHHHHCCCEEECCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCC
GRVFMAGEDITGLPPHDLFHKGLLRTFQIAHEFSSMSCRENLMMVPGDQAGETLWNTWFG
CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHH
RKRIADQERALRAKADEVLEFLTIEHLADHKAGQISGGQKKLLELGRTMMVDARIVFLDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCHHEEEEEEEEEEEC
VGAGVNRTLLNTIGDAILRLNKERGYTFVVIEHDMDFIGRLCDPVICMAEGKVLAQGTLP
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCEEEEECCCEEECCCCC
EIKANEQVIEAYLGTGLKNKDKIGA
CCCCCHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MQGTGMIVVQDLHKHFGGFRAVDGASLEIAQGSITGLIGPNGAGKTTLFNVIAGVLKPTS
CCCCCEEEEHHHHHHCCCEEECCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCC
GRVFMAGEDITGLPPHDLFHKGLLRTFQIAHEFSSMSCRENLMMVPGDQAGETLWNTWFG
CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHH
RKRIADQERALRAKADEVLEFLTIEHLADHKAGQISGGQKKLLELGRTMMVDARIVFLDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCHHEEEEEEEEEEEC
VGAGVNRTLLNTIGDAILRLNKERGYTFVVIEHDMDFIGRLCDPVICMAEGKVLAQGTLP
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCEEEEECCCEEECCCCC
EIKANEQVIEAYLGTGLKNKDKIGA
CCCCCHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]

Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087; 11470432 [H]