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The map label for this gene is cycY [H]

Identifier: 110679787

GI number: 110679787

Start: 2438519

End: 2439058

Strand: Direct

Name: cycY [H]

Synonym: RD1_2551

Alternate gene names: 110679787

Gene position: 2438519-2439058 (Clockwise)

Preceding gene: 110679786

Following gene: 110679792

Centisome position: 59.0

GC content: 61.48

Gene sequence:

>540_bases
ATGCCTAAGATATCGCCGCTGATGATTGCACCGCCGCTGATCTTTGCGGGCTTTATCGCATTGGCTGGCGTTGGCATGTT
TCGCAACGACCCGAACGAGCTGCGATCGACTCTGGTCGGCAAACCCGCGCCGCCCATCACCGAGGTGGGGCTGGAGGGGT
TTGAACCGGTCACCGCAGAGGCGATGGCAACGGGAGAGGTCACGCTCGTCAATTTCTGGGCCTCATGGTGCCCGCCCTGT
CACGCGGAGCATCCAAAGCTTTTGGAGATGGCCGCGGAGGGCATGCCGATCATCGGTGTGAACTTCAAGGACAAGGCAGG
CCCCGCCGGCGGGTATCTGACCGATGACGGCAATCCGTTTCGGGCGGTGGCTTTTGACCCGCAAGGGCGCACGGCGATTG
ACTGGGGGGTGACGGCCCCGCCGGAGACATTCATTCTGGATGCAGAAGGCACGGTGCTGTTTCGCTTTGCAGGCCCGTTG
GTCGGCAGCGATTATGAGCAGCGGTTCCTGCCCGAACTGGAAAAAGCATTGGGCCAGTAA

Upstream 100 bases:

>100_bases
GCAACGCTATTGTTATTGGCCTTGTTGGTTTTCATCACGTTACATAAAGGGCGCAAAGCGCGCCGTGCCCTTGATGAAAT
CGAACGCAAAAGAGACAGAG

Downstream 100 bases:

>100_bases
TCGGCCCACCTGCGCATATGACCCCGGCACTGTGCGCGGGCTGACCGGTATTTTTGAACTTGGATCGGGCCATGGGCGTC
ACGAATTTGCACGCTAAGAC

Product: thiol:disulfide interchange protein cycY, putative

Products: NA

Alternate protein names: Cytochrome c biogenesis protein CcmG [H]

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MPKISPLMIAPPLIFAGFIALAGVGMFRNDPNELRSTLVGKPAPPITEVGLEGFEPVTAEAMATGEVTLVNFWASWCPPC
HAEHPKLLEMAAEGMPIIGVNFKDKAGPAGGYLTDDGNPFRAVAFDPQGRTAIDWGVTAPPETFILDAEGTVLFRFAGPL
VGSDYEQRFLPELEKALGQ

Sequences:

>Translated_179_residues
MPKISPLMIAPPLIFAGFIALAGVGMFRNDPNELRSTLVGKPAPPITEVGLEGFEPVTAEAMATGEVTLVNFWASWCPPC
HAEHPKLLEMAAEGMPIIGVNFKDKAGPAGGYLTDDGNPFRAVAFDPQGRTAIDWGVTAPPETFILDAEGTVLFRFAGPL
VGSDYEQRFLPELEKALGQ
>Mature_178_residues
PKISPLMIAPPLIFAGFIALAGVGMFRNDPNELRSTLVGKPAPPITEVGLEGFEPVTAEAMATGEVTLVNFWASWCPPCH
AEHPKLLEMAAEGMPIIGVNFKDKAGPAGGYLTDDGNPFRAVAFDPQGRTAIDWGVTAPPETFILDAEGTVLFRFAGPLV
GSDYEQRFLPELEKALGQ

Specific function: Required for disulfide bond formation in some periplasmic proteins. Also act as a disulfide oxidoreductase in cytochromes c biogenesis. The cysteines of apocytochromes c must be in the reduced state for covalent linkage between the two moieties to occur [

COG id: COG0526

COG function: function code OC; Thiol-disulfide isomerase and thioredoxins

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Escherichia coli, GI1788523, Length=174, Percent_Identity=35.0574712643678, Blast_Score=117, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004799
- InterPro:   IPR013740
- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR017937
- InterPro:   IPR012335 [H]

Pfam domain/function: PF08534 Redoxin [H]

EC number: NA

Molecular weight: Translated: 19124; Mature: 18993

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKISPLMIAPPLIFAGFIALAGVGMFRNDPNELRSTLVGKPAPPITEVGLEGFEPVTAE
CCCCCCEEECHHHHHHHHHHHHCCCHHCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCHH
AMATGEVTLVNFWASWCPPCHAEHPKLLEMAAEGMPIIGVNFKDKAGPAGGYLTDDGNPF
HCCCCCEEEEEEHHHHCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCEECCCCCCE
RAVAFDPQGRTAIDWGVTAPPETFILDAEGTVLFRFAGPLVGSDYEQRFLPELEKALGQ
EEEEECCCCCEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PKISPLMIAPPLIFAGFIALAGVGMFRNDPNELRSTLVGKPAPPITEVGLEGFEPVTAE
CCCCCEEECHHHHHHHHHHHHCCCHHCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCHH
AMATGEVTLVNFWASWCPPCHAEHPKLLEMAAEGMPIIGVNFKDKAGPAGGYLTDDGNPF
HCCCCCEEEEEEHHHHCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCEECCCCCCE
RAVAFDPQGRTAIDWGVTAPPETFILDAEGTVLFRFAGPLVGSDYEQRFLPELEKALGQ
EEEEECCCCCEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9220005 [H]