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The map label for this gene is 110679730

Identifier: 110679730

GI number: 110679730

Start: 2375796

End: 2377076

Strand: Reverse

Name: 110679730

Synonym: RD1_2491

Alternate gene names: NA

Gene position: 2377076-2375796 (Counterclockwise)

Preceding gene: 110679732

Following gene: 110679729

Centisome position: 57.51

GC content: 48.48

Gene sequence:

>1281_bases
GTGACATCGTCTCCCTACTCAAAAGACGCACTCAAGGGTTGTTTTCGTGTCGGCGATGGCGGACGCTGGAAGGTGAATCT
TGACACACAACTAGAAGCGATCGCCGACTCAGCGGCGTCGCGAGCTGAGCAGAGACCGGTTGCACTAAGTTTGTCGTCAC
GAACTGACGCTTCTGGAGTGGTCCATCGGTTCGCCGCTGACATCGAAACAGATTTGATAATGCGGGCGACCTACCGTCGC
TTGGCGAAGCAGTACAACATCCAGCTGCCGAATAGAGAAGTTATTATTTCTGGAATTCTTGAAGCAGTTTGCGAAGGAAG
CCCTTACGCAGTTACTCGATGTGACATCCGATCCTTTTATGAAAACATTGATGCAGAGCCAATAGTTAAGAAAGTAATCG
CAGATACTCGTACGGATGCTAGCCTTCGTGCTGTGATTGAATGGATTTACGACGCTGGTGGTGGCGCGGTCCCTTCTAAT
GTGGCACCACGTGGTTTGGCTATCAGTACAGTACTTGCCGAGCTAGCCCTGAGCGACTTTGACAAAGCCTTGAAAAAACT
GCCTGGTGTCCATCGGTATTTCCGATTTGCCGATGATATGGTCATCTTCCACCTTCCTCAATATGACATACTAGCTGAAA
TTAATGATCTTTTAGATACTTTGGGTCTGGAGATTAACGAGAAGACAACAGTAACTCACTTTAGGTCCGACAAACCAAGT
GGGGCGGGAGCTAATACCAAAGCAAACTTTGACTTCCTGGGCTACGAATTCACGGCAAATAATAGTGTGAAAAGCTTTGA
GAGCCGAGAATTTTCTGTATCAATTACTGAAAGAAAACTTAAAAAGAGGCAGACAAGAGCTTATCTCGCGCTTAAGTCAT
TCAAGAAGCACAAGAATGCGTCGCTGCTTTTGGATCGGCTCAGATATATAACTTCAAATCAATCGATATACCGTACGAAG
CACTCGCGCGGAAAGCCGCGCGAAAAAGTGCGGACAGGAATATTCTACAACTACAATAGATGTGGCTACTACCCGCCATC
AAAGCGAGGGCGCGAGAAACGGGCCCACCCGGCATTTGAACTCGTAGGCCTCGATGGTTATCTAAAGACGCTTCTCTTTA
GCCCAAGTAGCGAATTTTCAGCGGACATTTTGGCCCTTCCTCCCCCACTTCTAGCTGAGCTGAGAAAGCTGTCATTCGCG
CAGGGCTACAGAGCGCGCATCATACGTCGGCACTCGCGGGCGCGTGTCGCAGAGATTTTCAGGGCTTGGAATAATGAGTA
A

Upstream 100 bases:

>100_bases
CAATGGCTATGGCCGAATTGCTGTCGGTCGTAGCTAAATGATCGTGGGCGACGGTTCGAACAAACAAACCAAACGTCAAA
TGACAGGCAAAAGGTAAACC

Downstream 100 bases:

>100_bases
TATTGACGACCGTATGCGTGAAGTTCGAGCAGTTCTTACTGAAACTCTTCCATTTGAACTACCTCTCGGATTTACAAACG
AAAATCTGTTCCTCTCTGAG

Product: putative reverse transcriptase/maturase family protein

Products: NA

Alternate protein names: Maturase Protein; Reverse Transcriptase/Maturase Family Protein; Retron-Type Reverse Transcriptase

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MTSSPYSKDALKGCFRVGDGGRWKVNLDTQLEAIADSAASRAEQRPVALSLSSRTDASGVVHRFAADIETDLIMRATYRR
LAKQYNIQLPNREVIISGILEAVCEGSPYAVTRCDIRSFYENIDAEPIVKKVIADTRTDASLRAVIEWIYDAGGGAVPSN
VAPRGLAISTVLAELALSDFDKALKKLPGVHRYFRFADDMVIFHLPQYDILAEINDLLDTLGLEINEKTTVTHFRSDKPS
GAGANTKANFDFLGYEFTANNSVKSFESREFSVSITERKLKKRQTRAYLALKSFKKHKNASLLLDRLRYITSNQSIYRTK
HSRGKPREKVRTGIFYNYNRCGYYPPSKRGREKRAHPAFELVGLDGYLKTLLFSPSSEFSADILALPPPLLAELRKLSFA
QGYRARIIRRHSRARVAEIFRAWNNE

Sequences:

>Translated_426_residues
MTSSPYSKDALKGCFRVGDGGRWKVNLDTQLEAIADSAASRAEQRPVALSLSSRTDASGVVHRFAADIETDLIMRATYRR
LAKQYNIQLPNREVIISGILEAVCEGSPYAVTRCDIRSFYENIDAEPIVKKVIADTRTDASLRAVIEWIYDAGGGAVPSN
VAPRGLAISTVLAELALSDFDKALKKLPGVHRYFRFADDMVIFHLPQYDILAEINDLLDTLGLEINEKTTVTHFRSDKPS
GAGANTKANFDFLGYEFTANNSVKSFESREFSVSITERKLKKRQTRAYLALKSFKKHKNASLLLDRLRYITSNQSIYRTK
HSRGKPREKVRTGIFYNYNRCGYYPPSKRGREKRAHPAFELVGLDGYLKTLLFSPSSEFSADILALPPPLLAELRKLSFA
QGYRARIIRRHSRARVAEIFRAWNNE
>Mature_425_residues
TSSPYSKDALKGCFRVGDGGRWKVNLDTQLEAIADSAASRAEQRPVALSLSSRTDASGVVHRFAADIETDLIMRATYRRL
AKQYNIQLPNREVIISGILEAVCEGSPYAVTRCDIRSFYENIDAEPIVKKVIADTRTDASLRAVIEWIYDAGGGAVPSNV
APRGLAISTVLAELALSDFDKALKKLPGVHRYFRFADDMVIFHLPQYDILAEINDLLDTLGLEINEKTTVTHFRSDKPSG
AGANTKANFDFLGYEFTANNSVKSFESREFSVSITERKLKKRQTRAYLALKSFKKHKNASLLLDRLRYITSNQSIYRTKH
SRGKPREKVRTGIFYNYNRCGYYPPSKRGREKRAHPAFELVGLDGYLKTLLFSPSSEFSADILALPPPLLAELRKLSFAQ
GYRARIIRRHSRARVAEIFRAWNNE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48016; Mature: 47885

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSPYSKDALKGCFRVGDGGRWKVNLDTQLEAIADSAASRAEQRPVALSLSSRTDASGV
CCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
VHRFAADIETDLIMRATYRRLAKQYNIQLPNREVIISGILEAVCEGSPYAVTRCDIRSFY
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHH
ENIDAEPIVKKVIADTRTDASLRAVIEWIYDAGGGAVPSNVAPRGLAISTVLAELALSDF
HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
DKALKKLPGVHRYFRFADDMVIFHLPQYDILAEINDLLDTLGLEINEKTTVTHFRSDKPS
HHHHHHCCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
GAGANTKANFDFLGYEFTANNSVKSFESREFSVSITERKLKKRQTRAYLALKSFKKHKNA
CCCCCCCCCCEEEEEEEECCCCHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCH
SLLLDRLRYITSNQSIYRTKHSRGKPREKVRTGIFYNYNRCGYYPPSKRGREKRAHPAFE
HHHHHHHHHHHCCCHHEECCCCCCCCHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCEE
LVGLDGYLKTLLFSPSSEFSADILALPPPLLAELRKLSFAQGYRARIIRRHSRARVAEIF
EEECHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAWNNE
HHHCCC
>Mature Secondary Structure 
TSSPYSKDALKGCFRVGDGGRWKVNLDTQLEAIADSAASRAEQRPVALSLSSRTDASGV
CCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
VHRFAADIETDLIMRATYRRLAKQYNIQLPNREVIISGILEAVCEGSPYAVTRCDIRSFY
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHH
ENIDAEPIVKKVIADTRTDASLRAVIEWIYDAGGGAVPSNVAPRGLAISTVLAELALSDF
HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
DKALKKLPGVHRYFRFADDMVIFHLPQYDILAEINDLLDTLGLEINEKTTVTHFRSDKPS
HHHHHHCCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
GAGANTKANFDFLGYEFTANNSVKSFESREFSVSITERKLKKRQTRAYLALKSFKKHKNA
CCCCCCCCCCEEEEEEEECCCCHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCH
SLLLDRLRYITSNQSIYRTKHSRGKPREKVRTGIFYNYNRCGYYPPSKRGREKRAHPAFE
HHHHHHHHHHHCCCHHEECCCCCCCCHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCEE
LVGLDGYLKTLLFSPSSEFSADILALPPPLLAELRKLSFAQGYRARIIRRHSRARVAEIF
EEECHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAWNNE
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA