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The map label for this gene is ydfH [C]

Identifier: 110679660

GI number: 110679660

Start: 2300598

End: 2301302

Strand: Reverse

Name: ydfH [C]

Synonym: RD1_2411

Alternate gene names: 110679660

Gene position: 2301302-2300598 (Counterclockwise)

Preceding gene: 110679661

Following gene: 110679659

Centisome position: 55.68

GC content: 59.01

Gene sequence:

>705_bases
GTGCCATTGCGGCTGCGAAAACAAGTGTTGAGAAACCCAATGCCCGATCAAAAGAACGCAACAGCCGTTGCAGAACACGT
GGCGGCAGTTCTGCGTGACCGGATCGTCAAGGGGGAACTGACCGCCCGCGACCGGATCGTCGAGCGACAGTTGTCGGCAG
AACTCGACGTCTCGCGCACACCGATCCGGGAAGCGCTCAAATTGCTGGAAGCGGACGGGCTGATCGAGATCACACTTCAC
CGCGGGGCAATCGTGTCGGACTACAAGCCTGAAGATGCTGTGGTTCTTTTTGATGTGATCTCGGTGCTGGAAAGCCTAGC
CGCCAGACGGGTTTGCGAAGGCATGACACCATCCACCCTTCAGCGCCTCGAAGATCTGCACGGACAGATGCTGGAATATC
ATCACGCGGGCCGCACAAATGACTACTTCGATCACAACACGCTGATCCATGACTTCATCATCCAGTCCTGCGCCAACCCC
GTCCTGATCACGACGCACAACCGCCTGATGATCCGTGCCCGGCGCGGGCGCTATCTTGCGATCCTGAACGAGGCACGTCT
GGAACAGGCCGTCGCAGAACACGAAGACCTGATGCAGGCATTCCGCCATGAAAGCGCCGACAAGGCTGCGCAGGTTTGGG
AAAGGCATCTGCGCCACACCGGGGAAACGGTCGCGGCCGTGTTGCTGGCAGAGGCAGACATCTGA

Upstream 100 bases:

>100_bases
TTCTGGCTGTTTTGATCGCCAGCTTGACGCACCCACGTAACGCGCGCGCGATCAGAATTCATAGGGGATTGACGCAGCGG
GATGCCTCCCGCATGTACTG

Downstream 100 bases:

>100_bases
ACGGCACATTCCCGGCAGCAGCCCCAAATTCTGCCTAAATTTACATCAATTGCGAATTAGACCGTCGGGATTGCCGCTAT
TTTCATGACGTCAATCCAAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator Gntr Family; GntR Family Regulatory Protein; Regulatory Protein; GntR-Family Transcriptional Regulator; GntR Domain-Containing Protein; Transcription Regulator; Transcriptional Regulator GntR Family Protein; Regulatory Protein GntR HTH; FCD Domain Protein; GntR Domain Protein; GntR Transcriptional Regulator; Transcriptional Repressor MdcY; Transcriptional Regulator-Like Protein; Transcriptional Regulator Protein; Regulatory Protein GntR HTHGntR C-Terminal Domain; GntR Family Regulatory; Transcription Regulator GntR Family; GntR Transcriptional Regulator GntR; Transcriptional Regulatory Protein; Transcriptional Regulatory Protein GntR Family; Transcription Regulator HTH GntR; Bacterial Regulatory Protein; Transcriptional Regulator Protein GntR Family; GntR Family Transcription Regulator

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MPLRLRKQVLRNPMPDQKNATAVAEHVAAVLRDRIVKGELTARDRIVERQLSAELDVSRTPIREALKLLEADGLIEITLH
RGAIVSDYKPEDAVVLFDVISVLESLAARRVCEGMTPSTLQRLEDLHGQMLEYHHAGRTNDYFDHNTLIHDFIIQSCANP
VLITTHNRLMIRARRGRYLAILNEARLEQAVAEHEDLMQAFRHESADKAAQVWERHLRHTGETVAAVLLAEADI

Sequences:

>Translated_234_residues
MPLRLRKQVLRNPMPDQKNATAVAEHVAAVLRDRIVKGELTARDRIVERQLSAELDVSRTPIREALKLLEADGLIEITLH
RGAIVSDYKPEDAVVLFDVISVLESLAARRVCEGMTPSTLQRLEDLHGQMLEYHHAGRTNDYFDHNTLIHDFIIQSCANP
VLITTHNRLMIRARRGRYLAILNEARLEQAVAEHEDLMQAFRHESADKAAQVWERHLRHTGETVAAVLLAEADI
>Mature_233_residues
PLRLRKQVLRNPMPDQKNATAVAEHVAAVLRDRIVKGELTARDRIVERQLSAELDVSRTPIREALKLLEADGLIEITLHR
GAIVSDYKPEDAVVLFDVISVLESLAARRVCEGMTPSTLQRLEDLHGQMLEYHHAGRTNDYFDHNTLIHDFIIQSCANPV
LITTHNRLMIRARRGRYLAILNEARLEQAVAEHEDLMQAFRHESADKAAQVWERHLRHTGETVAAVLLAEADI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787821, Length=219, Percent_Identity=25.1141552511416, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26550; Mature: 26419

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLRLRKQVLRNPMPDQKNATAVAEHVAAVLRDRIVKGELTARDRIVERQLSAELDVSRT
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC
PIREALKLLEADGLIEITLHRGAIVSDYKPEDAVVLFDVISVLESLAARRVCEGMTPSTL
CHHHHHHHHHCCCEEEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
QRLEDLHGQMLEYHHAGRTNDYFDHNTLIHDFIIQSCANPVLITTHNRLMIRARRGRYLA
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCEEE
ILNEARLEQAVAEHEDLMQAFRHESADKAAQVWERHLRHTGETVAAVLLAEADI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
>Mature Secondary Structure 
PLRLRKQVLRNPMPDQKNATAVAEHVAAVLRDRIVKGELTARDRIVERQLSAELDVSRT
CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC
PIREALKLLEADGLIEITLHRGAIVSDYKPEDAVVLFDVISVLESLAARRVCEGMTPSTL
CHHHHHHHHHCCCEEEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
QRLEDLHGQMLEYHHAGRTNDYFDHNTLIHDFIIQSCANPVLITTHNRLMIRARRGRYLA
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCEEE
ILNEARLEQAVAEHEDLMQAFRHESADKAAQVWERHLRHTGETVAAVLLAEADI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA