Click here to switch to the map view.

The map label for this gene is potD [C]

Identifier: 110679659

GI number: 110679659

Start: 2299398

End: 2300453

Strand: Reverse

Name: potD [C]

Synonym: RD1_2410

Alternate gene names: 110679659

Gene position: 2300453-2299398 (Counterclockwise)

Preceding gene: 110679660

Following gene: 110679658

Centisome position: 55.66

GC content: 59.09

Gene sequence:

>1056_bases
ATGACACAACCGAAATTTACCGCGATGACGCGCCGATCTGTGCTCAAGGCATCGGGCTATGCAGCGCTTGGTACTTTGGC
CGCACCCGCCATTCTGCGTGCTCAAAGCAGCGAACTGGTCATTGGCTGCGCGGGGTCCCACACAGCGTGGATGGAACAGA
TTGTCGTGCCGCACATGAAGGGTGCCATCGGCGCGGATATCTTGTTTGAGGGTACCAAATCCTCGGTGAACCTAGAAAAG
ATGTCGTCCAACAAGGATGCGCCCTATCTTTCGGTGGTTCAGATGGACGACCCCGTGATGATACAGGCGGTCGAGGCGGA
TCTGCTGACCCCGATCACCGCAGAGCCGGTGCCCAACATGACCGATCTGCGCCCGGATGCGGTGCATATGGATGGCATGT
GGTGCAACTATGTCCAGCCTTGGGCGGGGGTCGCCTATAACACCGAGTTCCAGCCCGATGGGGTGCAATCCTGGGCGCAA
TTGTGGACCGACGAAGCCAAGGGGCAGTTGATCATCCCATCGCTGCAGAACACCGAAGGCATGTGGACCCTTTTCGTGTC
AGCCATGCTGGGGTCGGGCAAACCCTTTTCCGAGGCGCAATATGAAATCGACGCCGCATTCGCCAAACTGGAGGAACTGA
AACCCAATCTGCTCTCGGTCTACACGACGATGAGTCAGGCCTTCAACCTGCTGGAGCAGGGCGAGATTACCATGCTGGCC
GGTAATTTCTCGTCCTACACGCTGCCGCGCAAGGCGACCGGGGTGCCTGTTGATCTGGCTGCCCCGTCCGAAGGTATTTT
CGCCATGCCATCGGGCATCTGCCTCGTCAAAGGGGGCCCGAACCCCGAACTGGCCGAGGCCTATGTCAACGAAATGCTCG
GGCCCCAGATGCAAACGGCGATTGCGGATTTTGCGACCTCGGTGCCCGCCAATACCACCGTCACCGCTGGTGCCATCATC
CCCGACGGCGTCCCGATCTATTCACCCGACTGGTCGTTTGTTGCGGCAAACCGGCGCGACTGGATTGAGCGTTTCGACAA
GTTGATGGCGCTCTGA

Upstream 100 bases:

>100_bases
ATCAATTGCGAATTAGACCGTCGGGATTGCCGCTATTTTCATGACGTCAATCCAAATGGCATGCCATTTATGCTCCAAAT
GATAACAACTGGGGATTGAT

Downstream 100 bases:

>100_bases
ACCCATGCCACCCCAAGTGCCGCGGAGCCTGCGAATGGGCAAATATCTGGACGTGACTGCTGTCGGCAAGGCGTTCAAAG
GCACCACGGTCATGTCGGAC

Product: spermidine/putrescine ABC transporter, substrate-binding protein

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: Spermidine/Putrescine ABC Transporter; ABC Transporter

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MTQPKFTAMTRRSVLKASGYAALGTLAAPAILRAQSSELVIGCAGSHTAWMEQIVVPHMKGAIGADILFEGTKSSVNLEK
MSSNKDAPYLSVVQMDDPVMIQAVEADLLTPITAEPVPNMTDLRPDAVHMDGMWCNYVQPWAGVAYNTEFQPDGVQSWAQ
LWTDEAKGQLIIPSLQNTEGMWTLFVSAMLGSGKPFSEAQYEIDAAFAKLEELKPNLLSVYTTMSQAFNLLEQGEITMLA
GNFSSYTLPRKATGVPVDLAAPSEGIFAMPSGICLVKGGPNPELAEAYVNEMLGPQMQTAIADFATSVPANTTVTAGAII
PDGVPIYSPDWSFVAANRRDWIERFDKLMAL

Sequences:

>Translated_351_residues
MTQPKFTAMTRRSVLKASGYAALGTLAAPAILRAQSSELVIGCAGSHTAWMEQIVVPHMKGAIGADILFEGTKSSVNLEK
MSSNKDAPYLSVVQMDDPVMIQAVEADLLTPITAEPVPNMTDLRPDAVHMDGMWCNYVQPWAGVAYNTEFQPDGVQSWAQ
LWTDEAKGQLIIPSLQNTEGMWTLFVSAMLGSGKPFSEAQYEIDAAFAKLEELKPNLLSVYTTMSQAFNLLEQGEITMLA
GNFSSYTLPRKATGVPVDLAAPSEGIFAMPSGICLVKGGPNPELAEAYVNEMLGPQMQTAIADFATSVPANTTVTAGAII
PDGVPIYSPDWSFVAANRRDWIERFDKLMAL
>Mature_350_residues
TQPKFTAMTRRSVLKASGYAALGTLAAPAILRAQSSELVIGCAGSHTAWMEQIVVPHMKGAIGADILFEGTKSSVNLEKM
SSNKDAPYLSVVQMDDPVMIQAVEADLLTPITAEPVPNMTDLRPDAVHMDGMWCNYVQPWAGVAYNTEFQPDGVQSWAQL
WTDEAKGQLIIPSLQNTEGMWTLFVSAMLGSGKPFSEAQYEIDAAFAKLEELKPNLLSVYTTMSQAFNLLEQGEITMLAG
NFSSYTLPRKATGVPVDLAAPSEGIFAMPSGICLVKGGPNPELAEAYVNEMLGPQMQTAIADFATSVPANTTVTAGAIIP
DGVPIYSPDWSFVAANRRDWIERFDKLMAL

Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. Polyamine Binding Protein. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 460 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Stationary Phase,

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37893; Mature: 37762

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPKFTAMTRRSVLKASGYAALGTLAAPAILRAQSSELVIGCAGSHTAWMEQIVVPHMK
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHC
GAIGADILFEGTKSSVNLEKMSSNKDAPYLSVVQMDDPVMIQAVEADLLTPITAEPVPNM
CCCCCCEEEECCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEECHHHCCCCCCCCCCCC
TDLRPDAVHMDGMWCNYVQPWAGVAYNTEFQPDGVQSWAQLWTDEAKGQLIIPSLQNTEG
CCCCCCCEEECCEEECCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCC
MWTLFVSAMLGSGKPFSEAQYEIDAAFAKLEELKPNLLSVYTTMSQAFNLLEQGEITMLA
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEE
GNFSSYTLPRKATGVPVDLAAPSEGIFAMPSGICLVKGGPNPELAEAYVNEMLGPQMQTA
CCCCCCCCCCCCCCCEEEECCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHHCHHHHHH
IADFATSVPANTTVTAGAIIPDGVPIYSPDWSFVAANRRDWIERFDKLMAL
HHHHHHCCCCCCEEEECEECCCCCCEECCCCCEEECCHHHHHHHHHHHHCC
>Mature Secondary Structure 
TQPKFTAMTRRSVLKASGYAALGTLAAPAILRAQSSELVIGCAGSHTAWMEQIVVPHMK
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHC
GAIGADILFEGTKSSVNLEKMSSNKDAPYLSVVQMDDPVMIQAVEADLLTPITAEPVPNM
CCCCCCEEEECCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEECHHHCCCCCCCCCCCC
TDLRPDAVHMDGMWCNYVQPWAGVAYNTEFQPDGVQSWAQLWTDEAKGQLIIPSLQNTEG
CCCCCCCEEECCEEECCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCC
MWTLFVSAMLGSGKPFSEAQYEIDAAFAKLEELKPNLLSVYTTMSQAFNLLEQGEITMLA
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEE
GNFSSYTLPRKATGVPVDLAAPSEGIFAMPSGICLVKGGPNPELAEAYVNEMLGPQMQTA
CCCCCCCCCCCCCCCEEEECCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHHCHHHHHH
IADFATSVPANTTVTAGAIIPDGVPIYSPDWSFVAANRRDWIERFDKLMAL
HHHHHHCCCCCCEEEECEECCCCCCEECCCCCEEECCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA