| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is phnL [H]
Identifier: 110679638
GI number: 110679638
Start: 2278967
End: 2279650
Strand: Reverse
Name: phnL [H]
Synonym: RD1_2389
Alternate gene names: 110679638
Gene position: 2279650-2278967 (Counterclockwise)
Preceding gene: 110679639
Following gene: 110679637
Centisome position: 55.16
GC content: 59.06
Gene sequence:
>684_bases ATGATTGAACTCAAAGACGTTTCCAAAACTTTTACCCTGCATAATCAGGGAAGTGCTGTGATCGAGGTGATCAATGATGT GTCCTTCGCGGTTGCCCGGGGGGAATGTGTGGCGCTCACCGGGGCCTCTGGTGCGGGTAAATCCACGCTGATGCGGATGA TCTATGGCAATTACCTGACGCAGTCGGGCGAAATTAGCATCGGCGGTTTGGACATTGTTCGCTCTGAGCCGCGCGACATT ATCAAATTGCGCCGGGATGTGCTGGGCTATGTCAGCCAGTTCCTGCGTGTGGTGCCGCGTGTCCCGACGCTTGATGTGGT GGCAGAGCCTCTGCGCGCTTTGGGCGTACCGGCAGATGAAGCGCAGGACCGCGCGAGGGCGCTTCTGACCCAGTTGAACA TCCCCGAAAGGCTGTGGTCCTTGTCCCCCACAACCTTTTCGGGCGGCGAGCAACAGCGCGTGAATATTGCCCGTGGTTTT GCCCATGCCTACCCTGCGATACTGCTTGATGAACCCACCGCGAGCCTCGATGCTGCGAACCGCGAAGTGGTGCTGTCCTT GATCGAAGACGCCAAGGCGCGCGGCGCGGCCATCATCGGTATTTTCCACGACGAGTCCGCCCGCGCCCGCGTCTGTGATC GCGAGATTGATGTTGGCCGCTTTACTCCCGGAATGGCGGCATGA
Upstream 100 bases:
>100_bases CGGTCACGTTGTCGAGGCGGGCCTGACCGATCAGGTGCTGGATGATCCGCAGCACGCCTATAGCCAGCTTCTTGTCAGTT CCGTTTTACAGGTATGAGCC
Downstream 100 bases:
>100_bases CACTGACCGCACCATCCGCTGGACGCCTCATCGCGGTTGTCGGCCCATCGGGCGTTGGCAAGGACAGCGTGATGGCGGGC CTGCGCCGCGCCATCCCCAG
Product: phosphonate C-P lyase system protein PhnL
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 227; Mature: 227
Protein sequence:
>227_residues MIELKDVSKTFTLHNQGSAVIEVINDVSFAVARGECVALTGASGAGKSTLMRMIYGNYLTQSGEISIGGLDIVRSEPRDI IKLRRDVLGYVSQFLRVVPRVPTLDVVAEPLRALGVPADEAQDRARALLTQLNIPERLWSLSPTTFSGGEQQRVNIARGF AHAYPAILLDEPTASLDAANREVVLSLIEDAKARGAAIIGIFHDESARARVCDREIDVGRFTPGMAA
Sequences:
>Translated_227_residues MIELKDVSKTFTLHNQGSAVIEVINDVSFAVARGECVALTGASGAGKSTLMRMIYGNYLTQSGEISIGGLDIVRSEPRDI IKLRRDVLGYVSQFLRVVPRVPTLDVVAEPLRALGVPADEAQDRARALLTQLNIPERLWSLSPTTFSGGEQQRVNIARGF AHAYPAILLDEPTASLDAANREVVLSLIEDAKARGAAIIGIFHDESARARVCDREIDVGRFTPGMAA >Mature_227_residues MIELKDVSKTFTLHNQGSAVIEVINDVSFAVARGECVALTGASGAGKSTLMRMIYGNYLTQSGEISIGGLDIVRSEPRDI IKLRRDVLGYVSQFLRVVPRVPTLDVVAEPLRALGVPADEAQDRARALLTQLNIPERLWSLSPTTFSGGEQQRVNIARGF AHAYPAILLDEPTASLDAANREVVLSLIEDAKARGAAIIGIFHDESARARVCDREIDVGRFTPGMAA
Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]
COG id: COG4778
COG function: function code P; ABC-type phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI105990541, Length=191, Percent_Identity=26.7015706806283, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI116734710, Length=215, Percent_Identity=25.5813953488372, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI9955963, Length=188, Percent_Identity=34.5744680851064, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI215820660, Length=189, Percent_Identity=29.1005291005291, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI20143975, Length=189, Percent_Identity=29.1005291005291, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI46592964, Length=190, Percent_Identity=31.0526315789474, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI46592915, Length=190, Percent_Identity=31.0526315789474, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI46592971, Length=190, Percent_Identity=31.0526315789474, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI46592956, Length=190, Percent_Identity=31.0526315789474, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI46592898, Length=190, Percent_Identity=31.0526315789474, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI46592978, Length=190, Percent_Identity=31.0526315789474, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI45446740, Length=216, Percent_Identity=24.0740740740741, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI47078218, Length=216, Percent_Identity=24.0740740740741, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI153792144, Length=195, Percent_Identity=25.6410256410256, Blast_Score=67, Evalue=9e-12, Organism=Homo sapiens, GI27881501, Length=225, Percent_Identity=23.5555555555556, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI30795238, Length=225, Percent_Identity=23.5555555555556, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI27262624, Length=216, Percent_Identity=26.3888888888889, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI27262626, Length=216, Percent_Identity=26.3888888888889, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI42741659, Length=192, Percent_Identity=30.7291666666667, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1790534, Length=218, Percent_Identity=55.045871559633, Blast_Score=246, Evalue=1e-66, Organism=Escherichia coli, GI1787029, Length=223, Percent_Identity=35.4260089686099, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI1786398, Length=214, Percent_Identity=33.1775700934579, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI1787105, Length=218, Percent_Identity=31.651376146789, Blast_Score=109, Evalue=1e-25, Organism=Escherichia coli, GI1786703, Length=215, Percent_Identity=34.4186046511628, Blast_Score=109, Evalue=1e-25, Organism=Escherichia coli, GI87081834, Length=211, Percent_Identity=33.175355450237, Blast_Score=108, Evalue=2e-25, Organism=Escherichia coli, GI1789873, Length=204, Percent_Identity=35.2941176470588, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1788225, Length=235, Percent_Identity=35.7446808510638, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1789962, Length=198, Percent_Identity=29.7979797979798, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1789672, Length=221, Percent_Identity=30.7692307692308, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI145693107, Length=206, Percent_Identity=33.495145631068, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787500, Length=217, Percent_Identity=27.1889400921659, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1789891, Length=195, Percent_Identity=31.7948717948718, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789991, Length=212, Percent_Identity=33.0188679245283, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787759, Length=213, Percent_Identity=30.9859154929577, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787089, Length=196, Percent_Identity=34.6938775510204, Blast_Score=86, Evalue=1e-18, Organism=Escherichia coli, GI1786872, Length=217, Percent_Identity=31.7972350230415, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI87081791, Length=206, Percent_Identity=28.6407766990291, Blast_Score=85, Evalue=3e-18, Organism=Escherichia coli, GI1788761, Length=222, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1789032, Length=231, Percent_Identity=28.1385281385281, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1787758, Length=223, Percent_Identity=30.4932735426009, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1790544, Length=233, Percent_Identity=31.3304721030043, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI48995001, Length=201, Percent_Identity=30.8457711442786, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1788450, Length=211, Percent_Identity=31.7535545023697, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87081709, Length=216, Percent_Identity=30.5555555555556, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788644, Length=211, Percent_Identity=31.2796208530806, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786319, Length=214, Percent_Identity=28.5046728971963, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI1787712, Length=214, Percent_Identity=30.3738317757009, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI1790739, Length=201, Percent_Identity=29.3532338308458, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1788472, Length=220, Percent_Identity=25, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790467, Length=222, Percent_Identity=29.2792792792793, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786253, Length=194, Percent_Identity=31.9587628865979, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1788897, Length=199, Percent_Identity=29.6482412060301, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1787370, Length=194, Percent_Identity=28.8659793814433, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI48994997, Length=197, Percent_Identity=30.9644670050761, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1788506, Length=202, Percent_Identity=27.7227722772277, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI48994943, Length=216, Percent_Identity=27.7777777777778, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1787792, Length=207, Percent_Identity=31.4009661835749, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1789593, Length=196, Percent_Identity=30.6122448979592, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI48994883, Length=229, Percent_Identity=26.2008733624454, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1786698, Length=189, Percent_Identity=27.5132275132275, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI87082267, Length=205, Percent_Identity=27.3170731707317, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786345, Length=214, Percent_Identity=31.3084112149533, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1790190, Length=228, Percent_Identity=25.8771929824561, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788210, Length=209, Percent_Identity=28.2296650717703, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1790525, Length=216, Percent_Identity=25, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI87081782, Length=219, Percent_Identity=27.8538812785388, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI87082268, Length=197, Percent_Identity=29.4416243654822, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1786563, Length=186, Percent_Identity=29.0322580645161, Blast_Score=64, Evalue=6e-12, Organism=Escherichia coli, GI1787164, Length=198, Percent_Identity=29.2929292929293, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1789890, Length=194, Percent_Identity=30.4123711340206, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1787547, Length=229, Percent_Identity=25.3275109170306, Blast_Score=61, Evalue=6e-11, Organism=Caenorhabditis elegans, GI25146777, Length=207, Percent_Identity=35.2657004830918, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193211017, Length=193, Percent_Identity=34.1968911917098, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI193211015, Length=193, Percent_Identity=34.1968911917098, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI71996809, Length=193, Percent_Identity=34.1968911917098, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI212646699, Length=182, Percent_Identity=32.967032967033, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71992285, Length=192, Percent_Identity=29.1666666666667, Blast_Score=73, Evalue=9e-14, Organism=Caenorhabditis elegans, GI71996550, Length=180, Percent_Identity=31.6666666666667, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI115533608, Length=210, Percent_Identity=27.6190476190476, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17558664, Length=194, Percent_Identity=31.9587628865979, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17510237, Length=217, Percent_Identity=26.2672811059908, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17541710, Length=193, Percent_Identity=30.0518134715026, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=212, Percent_Identity=29.7169811320755, Blast_Score=69, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6322640, Length=204, Percent_Identity=30.3921568627451, Blast_Score=66, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6319856, Length=177, Percent_Identity=30.5084745762712, Blast_Score=62, Evalue=6e-11, Organism=Drosophila melanogaster, GI24666092, Length=196, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI28574533, Length=211, Percent_Identity=27.9620853080569, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI28571209, Length=215, Percent_Identity=26.5116279069767, Blast_Score=70, Evalue=8e-13, Organism=Drosophila melanogaster, GI19920532, Length=214, Percent_Identity=28.5046728971963, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24580930, Length=214, Percent_Identity=28.5046728971963, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24648314, Length=195, Percent_Identity=27.6923076923077, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21357907, Length=159, Percent_Identity=34.5911949685535, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24650855, Length=207, Percent_Identity=28.5024154589372, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24650853, Length=207, Percent_Identity=28.5024154589372, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24582014, Length=192, Percent_Identity=27.0833333333333, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24582012, Length=192, Percent_Identity=27.0833333333333, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI281362751, Length=208, Percent_Identity=28.3653846153846, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR012701 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 24526; Mature: 24526
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIELKDVSKTFTLHNQGSAVIEVINDVSFAVARGECVALTGASGAGKSTLMRMIYGNYLT CCCCCCCCCEEEEECCCHHHHHHHHHHHHEEECCCEEEEECCCCCCHHHHHHHHHHHHHC QSGEISIGGLDIVRSEPRDIIKLRRDVLGYVSQFLRVVPRVPTLDVVAEPLRALGVPADE CCCCEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH AQDRARALLTQLNIPERLWSLSPTTFSGGEQQRVNIARGFAHAYPAILLDEPTASLDAAN HHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCC REVVLSLIEDAKARGAAIIGIFHDESARARVCDREIDVGRFTPGMAA HHHHHHHHHHHHCCCEEEEEEEECCCCHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MIELKDVSKTFTLHNQGSAVIEVINDVSFAVARGECVALTGASGAGKSTLMRMIYGNYLT CCCCCCCCCEEEEECCCHHHHHHHHHHHHEEECCCEEEEECCCCCCHHHHHHHHHHHHHC QSGEISIGGLDIVRSEPRDIIKLRRDVLGYVSQFLRVVPRVPTLDVVAEPLRALGVPADE CCCCEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH AQDRARALLTQLNIPERLWSLSPTTFSGGEQQRVNIARGFAHAYPAILLDEPTASLDAAN HHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCC REVVLSLIEDAKARGAAIIGIFHDESARARVCDREIDVGRFTPGMAA HHHHHHHHHHHHCCCEEEEEEEECCCCHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]