| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is phnK [H]
Identifier: 110679639
GI number: 110679639
Start: 2279654
End: 2280424
Strand: Reverse
Name: phnK [H]
Synonym: RD1_2390
Alternate gene names: 110679639
Gene position: 2280424-2279654 (Counterclockwise)
Preceding gene: 110679640
Following gene: 110679638
Centisome position: 55.17
GC content: 62.91
Gene sequence:
>771_bases ATGACCCCTTTGCTATCCGTTCAAGGCATCACCAAGCGATACGGCACATATATCGGCTGCGCGGATGTTTCGTTTGATCT CTATCCCGGTGAGGTTATGGGGATCGTGGGCGAAAGCGGGTCGGGCAAATCCACCTTGCTCAATTGCATGGCGGGGCATT TGGCCCCCGATGCCGGACGGGTGGTCTACGACACCCGCACCGACGGCCCGCGCGACACCATCACGATGTCCGAATCCGAA CGGCGCATGCTGGGGCGCACCGATTGGGCCTTCGTCCACCAGCACGCCCGTGACGGGCTACGCATGGGCGTGAGTGCCGG TGGCAACGTAGGCGAGCGGTTGATGGCTGTGGGCGAGCGTCACTACGGCGACATCCGCGACAAGGCCACGGACTGGCTGG GCCGGGTCGAGATCGATGCATCCCGTGTGGATGACCGGCCCACGACCTTCTCTGGCGGGATGCAGCAACGCCTGCAGATC GCGCGCAATCTGGTTACCGGCCCGCGTCTCGTCTTCATGGATGAACCCACAGGCGGCCTTGATGTCTCGGTGCAGGCGCG GCTGCTGGACCTGCTGCGCGGTCTCGTGCGCGACATGGGCCTGTCAGCGATCATTGTCACCCACGATCTGGCTGTGGTGC GCCTGTTGGCGGACCGCCTGATGGTCATGAAGTCCGGTCACGTTGTCGAGGCGGGCCTGACCGATCAGGTGCTGGATGAT CCGCAGCACGCCTATAGCCAGCTTCTTGTCAGTTCCGTTTTACAGGTATGA
Upstream 100 bases:
>100_bases ACGCAGGGGGGCGGATTTTTGTCTGTTCCGACACTGATTACTGCGAAGCGCGCCGCGCCGCGGGCCACATCGGCAAAGAT AATGGCGGAAAGGACGCGGC
Downstream 100 bases:
>100_bases GCCATGATTGAACTCAAAGACGTTTCCAAAACTTTTACCCTGCATAATCAGGGAAGTGCTGTGATCGAGGTGATCAATGA TGTGTCCTTCGCGGTTGCCC
Product: phosphonate C-P lyase system protein PhnK
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MTPLLSVQGITKRYGTYIGCADVSFDLYPGEVMGIVGESGSGKSTLLNCMAGHLAPDAGRVVYDTRTDGPRDTITMSESE RRMLGRTDWAFVHQHARDGLRMGVSAGGNVGERLMAVGERHYGDIRDKATDWLGRVEIDASRVDDRPTTFSGGMQQRLQI ARNLVTGPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDMGLSAIIVTHDLAVVRLLADRLMVMKSGHVVEAGLTDQVLDD PQHAYSQLLVSSVLQV
Sequences:
>Translated_256_residues MTPLLSVQGITKRYGTYIGCADVSFDLYPGEVMGIVGESGSGKSTLLNCMAGHLAPDAGRVVYDTRTDGPRDTITMSESE RRMLGRTDWAFVHQHARDGLRMGVSAGGNVGERLMAVGERHYGDIRDKATDWLGRVEIDASRVDDRPTTFSGGMQQRLQI ARNLVTGPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDMGLSAIIVTHDLAVVRLLADRLMVMKSGHVVEAGLTDQVLDD PQHAYSQLLVSSVLQV >Mature_255_residues TPLLSVQGITKRYGTYIGCADVSFDLYPGEVMGIVGESGSGKSTLLNCMAGHLAPDAGRVVYDTRTDGPRDTITMSESER RMLGRTDWAFVHQHARDGLRMGVSAGGNVGERLMAVGERHYGDIRDKATDWLGRVEIDASRVDDRPTTFSGGMQQRLQIA RNLVTGPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDMGLSAIIVTHDLAVVRLLADRLMVMKSGHVVEAGLTDQVLDDP QHAYSQLLVSSVLQV
Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]
COG id: COG4107
COG function: function code P; ABC-type phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9955963, Length=224, Percent_Identity=29.4642857142857, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI105990541, Length=220, Percent_Identity=25.9090909090909, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI47078218, Length=234, Percent_Identity=26.4957264957265, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI45446740, Length=234, Percent_Identity=26.4957264957265, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI150417984, Length=246, Percent_Identity=26.8292682926829, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI153792144, Length=240, Percent_Identity=25, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI48994997, Length=253, Percent_Identity=68.3794466403162, Blast_Score=344, Evalue=4e-96, Organism=Escherichia coli, GI1787500, Length=232, Percent_Identity=36.2068965517241, Blast_Score=145, Evalue=2e-36, Organism=Escherichia coli, GI1789962, Length=230, Percent_Identity=35.2173913043478, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1789963, Length=256, Percent_Identity=34.375, Blast_Score=134, Evalue=7e-33, Organism=Escherichia coli, GI145693107, Length=263, Percent_Identity=32.319391634981, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI48994883, Length=256, Percent_Identity=33.984375, Blast_Score=127, Evalue=6e-31, Organism=Escherichia coli, GI1787758, Length=224, Percent_Identity=35.7142857142857, Blast_Score=125, Evalue=2e-30, Organism=Escherichia coli, GI1788506, Length=238, Percent_Identity=35.2941176470588, Blast_Score=117, Evalue=5e-28, Organism=Escherichia coli, GI1787759, Length=256, Percent_Identity=33.203125, Blast_Score=114, Evalue=5e-27, Organism=Escherichia coli, GI87081834, Length=221, Percent_Identity=35.7466063348416, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1789672, Length=253, Percent_Identity=29.2490118577075, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI87081791, Length=255, Percent_Identity=28.2352941176471, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1786398, Length=261, Percent_Identity=28.735632183908, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI1789864, Length=251, Percent_Identity=27.8884462151394, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI1788761, Length=238, Percent_Identity=31.5126050420168, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1787548, Length=264, Percent_Identity=29.1666666666667, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1787370, Length=252, Percent_Identity=26.984126984127, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1789032, Length=241, Percent_Identity=30.2904564315353, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1788225, Length=253, Percent_Identity=30.8300395256917, Blast_Score=104, Evalue=7e-24, Organism=Escherichia coli, GI1787029, Length=243, Percent_Identity=27.1604938271605, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1789891, Length=249, Percent_Identity=29.3172690763052, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787547, Length=265, Percent_Identity=28.6792452830189, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1788644, Length=242, Percent_Identity=31.404958677686, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1786872, Length=259, Percent_Identity=30.5019305019305, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1790525, Length=243, Percent_Identity=26.7489711934156, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787089, Length=234, Percent_Identity=30.3418803418803, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI87081709, Length=245, Percent_Identity=26.530612244898, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1790190, Length=222, Percent_Identity=30.1801801801802, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI1789890, Length=243, Percent_Identity=31.6872427983539, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI1790739, Length=242, Percent_Identity=30.5785123966942, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787105, Length=234, Percent_Identity=34.6153846153846, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790467, Length=230, Percent_Identity=26.9565217391304, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI48995001, Length=228, Percent_Identity=29.3859649122807, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1787164, Length=229, Percent_Identity=29.6943231441048, Blast_Score=88, Evalue=4e-19, Organism=Escherichia coli, GI87082268, Length=246, Percent_Identity=27.6422764227642, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1789873, Length=226, Percent_Identity=29.2035398230088, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1788165, Length=243, Percent_Identity=28.3950617283951, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1787792, Length=237, Percent_Identity=27.0042194092827, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1787712, Length=245, Percent_Identity=27.7551020408163, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1788210, Length=246, Percent_Identity=28.4552845528455, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786563, Length=227, Percent_Identity=28.1938325991189, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1789991, Length=233, Percent_Identity=28.3261802575107, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786253, Length=228, Percent_Identity=28.9473684210526, Blast_Score=80, Evalue=9e-17, Organism=Escherichia coli, GI1786703, Length=201, Percent_Identity=35.3233830845771, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788897, Length=212, Percent_Identity=26.4150943396226, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786319, Length=234, Percent_Identity=27.3504273504274, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI87082267, Length=250, Percent_Identity=28, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1788450, Length=245, Percent_Identity=24.4897959183673, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786345, Length=220, Percent_Identity=27.7272727272727, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790534, Length=227, Percent_Identity=29.9559471365639, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786981, Length=246, Percent_Identity=29.2682926829268, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1789593, Length=243, Percent_Identity=26.7489711934156, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI48994943, Length=230, Percent_Identity=24.7826086956522, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788472, Length=227, Percent_Identity=27.3127753303965, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI87081782, Length=234, Percent_Identity=22.2222222222222, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI2367384, Length=219, Percent_Identity=27.3972602739726, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787112, Length=223, Percent_Identity=30.0448430493274, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787041, Length=281, Percent_Identity=22.7758007117438, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17558664, Length=236, Percent_Identity=30.0847457627119, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17565938, Length=250, Percent_Identity=26, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI193208177, Length=232, Percent_Identity=26.7241379310345, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI71992290, Length=236, Percent_Identity=28.3898305084746, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17543740, Length=240, Percent_Identity=25.4166666666667, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI115533608, Length=230, Percent_Identity=26.0869565217391, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI25146777, Length=233, Percent_Identity=27.4678111587983, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17539902, Length=223, Percent_Identity=29.1479820627803, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17541710, Length=209, Percent_Identity=26.7942583732057, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17567269, Length=211, Percent_Identity=25.5924170616114, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6322640, Length=250, Percent_Identity=29.2, Blast_Score=72, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641565, Length=220, Percent_Identity=30, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI85726357, Length=230, Percent_Identity=25.6521739130435, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI23397593, Length=241, Percent_Identity=27.8008298755187, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI85816269, Length=212, Percent_Identity=29.2452830188679, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24580553, Length=212, Percent_Identity=29.2452830188679, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI85724864, Length=219, Percent_Identity=29.6803652968037, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24580555, Length=219, Percent_Identity=29.6803652968037, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI161076682, Length=213, Percent_Identity=30.5164319248826, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI161076684, Length=213, Percent_Identity=30.5164319248826, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24581617, Length=213, Percent_Identity=30.5164319248826, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24581615, Length=213, Percent_Identity=30.5164319248826, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24643674, Length=229, Percent_Identity=24.4541484716157, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI21357907, Length=236, Percent_Identity=25, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI19920532, Length=228, Percent_Identity=30.2631578947368, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24580930, Length=228, Percent_Identity=30.2631578947368, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI221512771, Length=228, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI28573571, Length=235, Percent_Identity=24.6808510638298, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28573573, Length=229, Percent_Identity=25.3275109170306, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI28574744, Length=210, Percent_Identity=27.1428571428571, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI28574150, Length=202, Percent_Identity=23.7623762376238, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007328, Length=202, Percent_Identity=23.7623762376238, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR012700 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 27864; Mature: 27733
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPLLSVQGITKRYGTYIGCADVSFDLYPGEVMGIVGESGSGKSTLLNCMAGHLAPDAGR CCCCCCHHHHHHHHCCEEEEECCEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCC VVYDTRTDGPRDTITMSESERRMLGRTDWAFVHQHARDGLRMGVSAGGNVGERLMAVGER EEEECCCCCCCCEEEECCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH HYGDIRDKATDWLGRVEIDASRVDDRPTTFSGGMQQRLQIARNLVTGPRLVFMDEPTGGL HCCCHHHHHHHHHHEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCC DVSVQARLLDLLRGLVRDMGLSAIIVTHDLAVVRLLADRLMVMKSGHVVEAGLTDQVLDD CHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHCC PQHAYSQLLVSSVLQV HHHHHHHHHHHHHHCC >Mature Secondary Structure TPLLSVQGITKRYGTYIGCADVSFDLYPGEVMGIVGESGSGKSTLLNCMAGHLAPDAGR CCCCCHHHHHHHHCCEEEEECCEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCC VVYDTRTDGPRDTITMSESERRMLGRTDWAFVHQHARDGLRMGVSAGGNVGERLMAVGER EEEECCCCCCCCEEEECCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH HYGDIRDKATDWLGRVEIDASRVDDRPTTFSGGMQQRLQIARNLVTGPRLVFMDEPTGGL HCCCHHHHHHHHHHEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCC DVSVQARLLDLLRGLVRDMGLSAIIVTHDLAVVRLLADRLMVMKSGHVVEAGLTDQVLDD CHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHCC PQHAYSQLLVSSVLQV HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]