Click here to switch to the map view.

The map label for this gene is yjhU [H]

Identifier: 110679634

GI number: 110679634

Start: 2275640

End: 2276650

Strand: Direct

Name: yjhU [H]

Synonym: RD1_2385

Alternate gene names: 110679634

Gene position: 2275640-2276650 (Clockwise)

Preceding gene: 110679633

Following gene: 110679644

Centisome position: 55.06

GC content: 65.28

Gene sequence:

>1011_bases
GTGTCGCTGCCGGCAGGGTCCACGGGCAAGGCGAGAGCTGCCGCGCCGGATCTGGCGCGGTTCCCCGCACGCGAAGACGC
GCTTTATATTGAGGCCGCGTGGCTTTATTACCACGATGGGCTGAACCAGAACGAGATCGCAGCGCGCATGCGGATCAGCC
GCGCATCGGTGGTGAATTACCTCAATGAGGTGCGCGCGCGTGACTGGGTCCGGGTCCATCTGGACAGTGATGTGTTTCGG
GGGCATCGGCTGGCGGCGCAACTCTGCGCGCGATATGGCTTGGCGGAGGCGCTGGTGGTGCCGGAGGTCACACAGGATCG
CGACGCTGCTGCCAGTGTGGCGCGGGTCACGCGGGCTGCTGCGGATTGGTTGCCGCGATTGCTGGAACCGGGCGATCGTC
TGGGGGTATCATGGGGCGCGACCGTCTATCAAATGGCCCGGCAGGTGCCCCACACGCCCGTGCCGGATCTGACGGTGACG
CAGCTTCTGGGCTCACGCTCTGCCGCACTTGGGTTCGAAGCGGAGGCCTGTACGTCGATGCTGGCCCATCGTTTGGACGG
GCAGTGTATCAACCTGCATGTGCCACTGGTTCTGTCGAGCAAGAACCTGCGCGATGCGCTTTGTGATGAGCCTGTTGTGC
GCGACCAGCTCGCGGCATTGGCGATGTGTAACAAGACCGTGCTGGCCTGTGGCACCTGCGACGCGGACGCCCATGTCGTA
CGCAGCGGCATCCTGAGCGCCGAGGGTATCGCGGCATACCGCGCAAAGGGAGCGGCGGGCGTGATCTGTGGACGCCTGAT
TGATGCCGAGGGGCGGCCCATGGTCGCCGAGGTCGAAGAGCGGATGATCGGCGTCTCACTGGAGCAGATGCGCGGCAAGG
ACATCGCGCTTTTGGTCGCTGCCGGACCGGGCCGCGCCGGACCCGCGCAAGCCGCGATCAAGGGCGGTTTCGTTACACAT
CTGGTGACCAGCGCGGCGGTGGCAGAAGAGCTTCTCGGCATGAAACCTTGA

Upstream 100 bases:

>100_bases
GTTGGTCACGGGCCTGATCACCGAACGCGGGGTTTGCGACGCCTCCGAGGCCGGGTTGTCCGACCTCTTCCCCAACTTTG
CGAAGGCGGCAGAATAGAAG

Downstream 100 bases:

>100_bases
GGCGTCATGCGAAAAACCTCGATCATGAAATGCTGGCCGACATCAATGATTTCAGCATGTTACACGATACCTGATGTGTC
AGATACTTCGACAGACGCGC

Product: transcriptional regulator, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MSLPAGSTGKARAAAPDLARFPAREDALYIEAAWLYYHDGLNQNEIAARMRISRASVVNYLNEVRARDWVRVHLDSDVFR
GHRLAAQLCARYGLAEALVVPEVTQDRDAAASVARVTRAAADWLPRLLEPGDRLGVSWGATVYQMARQVPHTPVPDLTVT
QLLGSRSAALGFEAEACTSMLAHRLDGQCINLHVPLVLSSKNLRDALCDEPVVRDQLAALAMCNKTVLACGTCDADAHVV
RSGILSAEGIAAYRAKGAAGVICGRLIDAEGRPMVAEVEERMIGVSLEQMRGKDIALLVAAGPGRAGPAQAAIKGGFVTH
LVTSAAVAEELLGMKP

Sequences:

>Translated_336_residues
MSLPAGSTGKARAAAPDLARFPAREDALYIEAAWLYYHDGLNQNEIAARMRISRASVVNYLNEVRARDWVRVHLDSDVFR
GHRLAAQLCARYGLAEALVVPEVTQDRDAAASVARVTRAAADWLPRLLEPGDRLGVSWGATVYQMARQVPHTPVPDLTVT
QLLGSRSAALGFEAEACTSMLAHRLDGQCINLHVPLVLSSKNLRDALCDEPVVRDQLAALAMCNKTVLACGTCDADAHVV
RSGILSAEGIAAYRAKGAAGVICGRLIDAEGRPMVAEVEERMIGVSLEQMRGKDIALLVAAGPGRAGPAQAAIKGGFVTH
LVTSAAVAEELLGMKP
>Mature_335_residues
SLPAGSTGKARAAAPDLARFPAREDALYIEAAWLYYHDGLNQNEIAARMRISRASVVNYLNEVRARDWVRVHLDSDVFRG
HRLAAQLCARYGLAEALVVPEVTQDRDAAASVARVTRAAADWLPRLLEPGDRLGVSWGATVYQMARQVPHTPVPDLTVTQ
LLGSRSAALGFEAEACTSMLAHRLDGQCINLHVPLVLSSKNLRDALCDEPVVRDQLAALAMCNKTVLACGTCDADAHVVR
SGILSAEGIAAYRAKGAAGVICGRLIDAEGRPMVAEVEERMIGVSLEQMRGKDIALLVAAGPGRAGPAQAAIKGGFVTHL
VTSAAVAEELLGMKP

Specific function: Unknown

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=306, Percent_Identity=35.2941176470588, Blast_Score=203, Evalue=1e-53,
Organism=Escherichia coli, GI1787791, Length=307, Percent_Identity=27.3615635179153, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR007324 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 35789; Mature: 35657

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPAGSTGKARAAAPDLARFPAREDALYIEAAWLYYHDGLNQNEIAARMRISRASVVNY
CCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHH
LNEVRARDWVRVHLDSDVFRGHRLAAQLCARYGLAEALVVPEVTQDRDAAASVARVTRAA
HHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHH
ADWLPRLLEPGDRLGVSWGATVYQMARQVPHTPVPDLTVTQLLGSRSAALGFEAEACTSM
HHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHCCCCHHHHHHH
LAHRLDGQCINLHVPLVLSSKNLRDALCDEPVVRDQLAALAMCNKTVLACGTCDADAHVV
HHHHCCCCEEEEEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHH
RSGILSAEGIAAYRAKGAAGVICGRLIDAEGRPMVAEVEERMIGVSLEQMRGKDIALLVA
HHHCCCCCCHHHHHCCCCHHHHHHHEECCCCCCHHHHHHHHHHCCCHHHHCCCCEEEEEE
AGPGRAGPAQAAIKGGFVTHLVTSAAVAEELLGMKP
ECCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLPAGSTGKARAAAPDLARFPAREDALYIEAAWLYYHDGLNQNEIAARMRISRASVVNY
CCCCCCCCCCCCCCCHHHHCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHH
LNEVRARDWVRVHLDSDVFRGHRLAAQLCARYGLAEALVVPEVTQDRDAAASVARVTRAA
HHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHH
ADWLPRLLEPGDRLGVSWGATVYQMARQVPHTPVPDLTVTQLLGSRSAALGFEAEACTSM
HHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHCCCCHHHHHHH
LAHRLDGQCINLHVPLVLSSKNLRDALCDEPVVRDQLAALAMCNKTVLACGTCDADAHVV
HHHHCCCCEEEEEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHH
RSGILSAEGIAAYRAKGAAGVICGRLIDAEGRPMVAEVEERMIGVSLEQMRGKDIALLVA
HHHCCCCCCHHHHHCCCCHHHHHHHEECCCCCCHHHHHHHHHHCCCHHHHCCCCEEEEEE
AGPGRAGPAQAAIKGGFVTHLVTSAAVAEELLGMKP
ECCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]