Click here to switch to the map view.

The map label for this gene is petF [C]

Identifier: 110679626

GI number: 110679626

Start: 2266664

End: 2267017

Strand: Reverse

Name: petF [C]

Synonym: RD1_2377

Alternate gene names: 110679626

Gene position: 2267017-2266664 (Counterclockwise)

Preceding gene: 110679627

Following gene: 110679625

Centisome position: 54.85

GC content: 58.47

Gene sequence:

>354_bases
ATGCGAAAACACAAGGTGACATTGCGAAACCGCGATAACCTGACATTCGATGTTGGCGAAGACGAGGCGATCATCGACAT
CGTCGAGGCCGCAGGCCATGTGCTGCCGATCGCCTGCCGCTACGGCGGCTGCATCAGCTGTGCAGCGCGGATGATCTCTG
GCTCTGTGCGCCAACCCAAAGGCACCGCGCTGAACAAACGGCAATCAGAGGCGGGTTATGTGCTGCTTTGTGTGGCGCGA
CCGACGGCGGACTGCGTTTTTGACGTCGGTGTTGAAAGCCATACAACGCTTTATCAAAACCCATTCGCCAGCGCTGCAGC
AGCCAGTCAACTGGCGCGGGCGAGCAAGGAATGA

Upstream 100 bases:

>100_bases
GCTATCCCGGCGGTGATTGCTCATCCGACATCTGGATTTGAACAATCGGTAACACCTGCCCCGGCCCGGGATTTCGGGCC
GGGGTCACAGTGGGGGGCGC

Downstream 100 bases:

>100_bases
CAGCGCTGCCCGACATCGCCATCGGCCCGCATGCCGGGCGTTGGTCGGGCAGACTGATCATCGCTCTGATCGCCGTTGGC
TGGGTCTATGCGCTGGCACA

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MRKHKVTLRNRDNLTFDVGEDEAIIDIVEAAGHVLPIACRYGGCISCAARMISGSVRQPKGTALNKRQSEAGYVLLCVAR
PTADCVFDVGVESHTTLYQNPFASAAAASQLARASKE

Sequences:

>Translated_117_residues
MRKHKVTLRNRDNLTFDVGEDEAIIDIVEAAGHVLPIACRYGGCISCAARMISGSVRQPKGTALNKRQSEAGYVLLCVAR
PTADCVFDVGVESHTTLYQNPFASAAAASQLARASKE
>Mature_117_residues
MRKHKVTLRNRDNLTFDVGEDEAIIDIVEAAGHVLPIACRYGGCISCAARMISGSVRQPKGTALNKRQSEAGYVLLCVAR
PTADCVFDVGVESHTTLYQNPFASAAAASQLARASKE

Specific function: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions [H]

COG id: COG0633

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR010241
- InterPro:   IPR001041 [H]

Pfam domain/function: PF00111 Fer2 [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 12551; Mature: 12551

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKHKVTLRNRDNLTFDVGEDEAIIDIVEAAGHVLPIACRYGGCISCAARMISGSVRQPK
CCCCEEEEECCCCEEEECCCCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCCC
GTALNKRQSEAGYVLLCVARPTADCVFDVGVESHTTLYQNPFASAAAASQLARASKE
CCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCEEECCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MRKHKVTLRNRDNLTFDVGEDEAIIDIVEAAGHVLPIACRYGGCISCAARMISGSVRQPK
CCCCEEEEECCCCEEEECCCCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCCC
GTALNKRQSEAGYVLLCVARPTADCVFDVGVESHTTLYQNPFASAAAASQLARASKE
CCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCEEECCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: FAD [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6818222 [H]