Click here to switch to the map view.

The map label for this gene is 110679617

Identifier: 110679617

GI number: 110679617

Start: 2258257

End: 2259150

Strand: Reverse

Name: 110679617

Synonym: RD1_2363

Alternate gene names: NA

Gene position: 2259150-2258257 (Counterclockwise)

Preceding gene: 110679618

Following gene: 110679616

Centisome position: 54.66

GC content: 57.94

Gene sequence:

>894_bases
GTGATCCGCAACCCGATCCCCTGGCCCAATGGCGCGAAATGTGCCGTTGCGATCACCTTTGACATGGATGCGGACAGCCT
GATCCATATCGCCAAACCCGAAGACGCACATGAGCGGCTCTATCCCATTTCGATGGGGCGCTATGGGCCGATGGTCGCCC
TGCCCCGCATTCTGGATACCTATCGCCGCCTCGGTCTCAGGCAGTCATTCTTTATCCCCGGCTGGTGCCTTGAGACATAC
CCCGACGTGGCCGAGGCCGTTCTGAAAGACGGTCATGAGATTGGCCATCACGGTTATCTGCACGAGGACCCGGTCAAAAC
GCGCGGCGCGCAGCGGGAATGGTTTGAACGCACGCTCGACGTTCACCTGCGCATTTGCGGACAAAAGCCGCAAGGGTATC
GCGCGCCTGTCTATAACATCACGCAGGAAGTGGTCGATCTGATGATCGAGCACGGGATGCGCTATGACAGTTCCATGATG
GCGGATGACATTCCCTACCAGTTACAGACCGCCAATGGGGCGCTCTATGAAATGCCGGTGCATTGGGGCACGGATGATTG
GCCGCCCTTCGCCCATTACGATGAAATCGGGTATATGATGCCCGTCGCCGGGCCTTCGCACGGTCTCAGCGGTTTCTGGG
AAGAGTTTGAGGCGCAATACGACGCGGGCGGGTTTTTCATGCTGATCATCCATCCATTTCTGACCGGACGTCTTGCGCGC
TGGAAACAGGTTGAGGCGTGGATCACCCGCACGCGTGACACGCGGGACGTCTGGTTTGCAACGCTGAGCGAAATCGCCGA
TCATATGGACACATTGCAACGGGATGGCATCTGGCACCCAAGTGTCGAGACGCTGCCCTATTATCAAGGGCCGGTTTTGG
GTCAAAAGGAATGA

Upstream 100 bases:

>100_bases
CAGGAACGCGAATTGTCCAAGTTCGACCTGCACAGTGGCGATGAAATCTGGCTGTCGTGGGACACGCAGAGCGCGCATGT
CCTGAACCAGAGCTGACAGG

Downstream 100 bases:

>100_bases
CAGATATGAATGACGTCGATATCCGCATGCTGCGCATCGCCTATGACGAGGCGAAAGCCGGTTTTGACGAAGGCGGCTGC
CCCATCGGCTCAGTGCTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: Polysaccharide Deacetylase Family Protein; Xylanase/Chitin Deacetylase; Polysaccharide Deacetylase Domain Protein; Hydrolase; Polysaccharide Deacetylase Family; Polysaccharide Deactylase Domain-Containing Protein; Saccharide Deacetylase Slightly; Cyclic Imide Hydrolase; Polysaccharide Deacetylase Domain-Containing Protein; PEP-CTERM Locus Polysaccharide Deactylase; Deacetylase; Urate Catabolism Protein; Chitooligosaccharide Deacetylase

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MIRNPIPWPNGAKCAVAITFDMDADSLIHIAKPEDAHERLYPISMGRYGPMVALPRILDTYRRLGLRQSFFIPGWCLETY
PDVAEAVLKDGHEIGHHGYLHEDPVKTRGAQREWFERTLDVHLRICGQKPQGYRAPVYNITQEVVDLMIEHGMRYDSSMM
ADDIPYQLQTANGALYEMPVHWGTDDWPPFAHYDEIGYMMPVAGPSHGLSGFWEEFEAQYDAGGFFMLIIHPFLTGRLAR
WKQVEAWITRTRDTRDVWFATLSEIADHMDTLQRDGIWHPSVETLPYYQGPVLGQKE

Sequences:

>Translated_297_residues
MIRNPIPWPNGAKCAVAITFDMDADSLIHIAKPEDAHERLYPISMGRYGPMVALPRILDTYRRLGLRQSFFIPGWCLETY
PDVAEAVLKDGHEIGHHGYLHEDPVKTRGAQREWFERTLDVHLRICGQKPQGYRAPVYNITQEVVDLMIEHGMRYDSSMM
ADDIPYQLQTANGALYEMPVHWGTDDWPPFAHYDEIGYMMPVAGPSHGLSGFWEEFEAQYDAGGFFMLIIHPFLTGRLAR
WKQVEAWITRTRDTRDVWFATLSEIADHMDTLQRDGIWHPSVETLPYYQGPVLGQKE
>Mature_297_residues
MIRNPIPWPNGAKCAVAITFDMDADSLIHIAKPEDAHERLYPISMGRYGPMVALPRILDTYRRLGLRQSFFIPGWCLETY
PDVAEAVLKDGHEIGHHGYLHEDPVKTRGAQREWFERTLDVHLRICGQKPQGYRAPVYNITQEVVDLMIEHGMRYDSSMM
ADDIPYQLQTANGALYEMPVHWGTDDWPPFAHYDEIGYMMPVAGPSHGLSGFWEEFEAQYDAGGFFMLIIHPFLTGRLAR
WKQVEAWITRTRDTRDVWFATLSEIADHMDTLQRDGIWHPSVETLPYYQGPVLGQKE

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34222; Mature: 34222

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRNPIPWPNGAKCAVAITFDMDADSLIHIAKPEDAHERLYPISMGRYGPMVALPRILDT
CCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCHHHHEEEECCCCCCCHHHHHHHHHH
YRRLGLRQSFFIPGWCLETYPDVAEAVLKDGHEIGHHGYLHEDPVKTRGAQREWFERTLD
HHHHCCCCCCCCCCHHHHCCHHHHHHHHHCCHHHCCCCCCCCCCHHHCCCHHHHHHHHHH
VHLRICGQKPQGYRAPVYNITQEVVDLMIEHGMRYDSSMMADDIPYQLQTANGALYEMPV
HEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEEEEECCCEEEEECE
HWGTDDWPPFAHYDEIGYMMPVAGPSHGLSGFWEEFEAQYDAGGFFMLIIHPFLTGRLAR
ECCCCCCCCCCCHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHH
WKQVEAWITRTRDTRDVWFATLSEIADHMDTLQRDGIWHPSVETLPYYQGPVLGQKE
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIRNPIPWPNGAKCAVAITFDMDADSLIHIAKPEDAHERLYPISMGRYGPMVALPRILDT
CCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCHHHHEEEECCCCCCCHHHHHHHHHH
YRRLGLRQSFFIPGWCLETYPDVAEAVLKDGHEIGHHGYLHEDPVKTRGAQREWFERTLD
HHHHCCCCCCCCCCHHHHCCHHHHHHHHHCCHHHCCCCCCCCCCHHHCCCHHHHHHHHHH
VHLRICGQKPQGYRAPVYNITQEVVDLMIEHGMRYDSSMMADDIPYQLQTANGALYEMPV
HEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEEEEECCCEEEEECE
HWGTDDWPPFAHYDEIGYMMPVAGPSHGLSGFWEEFEAQYDAGGFFMLIIHPFLTGRLAR
ECCCCCCCCCCCHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHH
WKQVEAWITRTRDTRDVWFATLSEIADHMDTLQRDGIWHPSVETLPYYQGPVLGQKE
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA