Click here to switch to the map view.

The map label for this gene is yjeP [H]

Identifier: 110679613

GI number: 110679613

Start: 2254077

End: 2255699

Strand: Reverse

Name: yjeP [H]

Synonym: RD1_2358

Alternate gene names: 110679613

Gene position: 2255699-2254077 (Counterclockwise)

Preceding gene: 110679614

Following gene: 110679610

Centisome position: 54.58

GC content: 54.59

Gene sequence:

>1623_bases
TTGCTCAACAGGGCGACCCGCGGTATCAATCCAGAGCCGCACAGCGTTGTTTCAATGAAAGACGCCATTGACCGGGGCAG
ATTTGGTAAGGGAACGCTCGTGAATTTCTTGAGTTCATTTGAAATGCTGGACGGCAATTTCGCCATTTCTCTGAGTATTG
CCCTCCTTACGATCGCATGGCTCGGGCTGAAGCTCTTCTTTCGCAAGGTTCCACTGGGTGAAAGATACCCCAAACTCGCC
GTGACGGCCGATCTCGTGGTTCTGCCTCTTGCGACCCTGCTGGTCGGGCGTCTCACTTACAATGCGCACAAATGGCTGGA
GCTTGGTGATCTGAGCGCATTCATCAATGCGCTGACCCTGTTTACTCTGTTGATCGTTCTGGGGTGGTGCTGCGCGCGTT
TGGTTGAGCTTTTCGTGCTGTCAAAACGCAAGAATGACGACGCCACTTATTTGCCCGGGCTGCAGCGCGGTCTGCTTTTC
GCAGGTTTCCTGCTGGCAAGCGCCATCGCCTTTTTCAACATCATGGATTACTCTGTCACGGGCATTTACCTGTCGACCGG
TGCCCTCGCGGCATTGATCGCCTTTGCCATGCAAAAGACATTGGGCGATCTGTTTTCCGGCATCGCGCTCAGCGTGGAGC
ATCCCTTTCGCCTTGGCGATTACATCGAACTTGAGGATGGTACGCAGGGACAGATTACCGACATAAACTGGCGGGCAACG
CGGTTGCGCGGATGGGACAATGCGACTGTCGTCGTACCCAACAGCACCCTTGCTCAACAGCGCATCAACAACATGCATGG
CACAAACCACCCTTATGCGGAGTGGTACGAAATCAAGATACCCGCAGAAGTCGACCCGACGATGGCCAAGGCGCTGTTGC
TCGAAGCGGCCCTGCGATGTGACAAACTGTTAAAAAAACCCAGCCCCGCCATCCGCTTGGCAGATGCGACGACCATCCCC
TATGTTTATACGGTCTGGGTGCATTTTCCCAACTTCCTGTCGATGTTTGCCGGGCGCGAGCAGCTCTTTCGGGAAATCCA
CTACGCATTGAAAAATGCCGGGATCCAGATCGCACCGGAAACATACGAACTGCACTCCCGCAGGGCGGATGTGATCAAGG
TTGAACCACCGACCGCCCTTGTCACCCTCAAAAAGTTGGATATTGCCAATTTCCTCACCGATGAAGAGCTTGAACAGCTG
GTGCGGTCCAGCGAGCGGCTTGTCTTTGACGCAGGCACCACCATCGTGGCCGAAGGTGAAGTGTCACATGCCTTTGATAT
CATTGTGCATGGCGTGGTCGAAACCAGTGTCAATTCTGGCGGGACATCATCTAGGATGATTGGCGAGTTGAAACCGGGTG
AATACTACGGGCTTTATTCGATGATTGCCGACACCCCGTCGTTTCAGCAATTTGCCGCAGCCACGGATGTCACGGTCATT
CGCGTACATATCGAATGCATCCGGGCGCTGTTGCAAAACAGACCGGACCTGAGTGAAGAATTTGCCCGCATCGTCAAGCA
GAGGATGGATAATGCGCAAGCGGTGCGTCTTGGCGCGGACAAGACGCCGGCGCGTCTGACCTTTCAGGATATCATGCGGA
GACTCGATGCGCTGATGCGTTAG

Upstream 100 bases:

>100_bases
ATCACGCGGGGGGTGGCACACCTCTGCGGCAAAGCTGTCACAGACGCCTTCGCGCGCGACGCCAAGGATGCACAGCTTGG
GGGCGCAGCGCAGGGCGCAT

Downstream 100 bases:

>100_bases
CCTGCGCGCCGCTTTTGCTGCTTCAATTCAGAATGAAAAGCCGTATCTGACGGAGACGGTTTCCCTGCCGGGGTTGTGGC
TTTCGATCCCTGCGTTCGAA

Product: mechanosensitive channel protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MLNRATRGINPEPHSVVSMKDAIDRGRFGKGTLVNFLSSFEMLDGNFAISLSIALLTIAWLGLKLFFRKVPLGERYPKLA
VTADLVVLPLATLLVGRLTYNAHKWLELGDLSAFINALTLFTLLIVLGWCCARLVELFVLSKRKNDDATYLPGLQRGLLF
AGFLLASAIAFFNIMDYSVTGIYLSTGALAALIAFAMQKTLGDLFSGIALSVEHPFRLGDYIELEDGTQGQITDINWRAT
RLRGWDNATVVVPNSTLAQQRINNMHGTNHPYAEWYEIKIPAEVDPTMAKALLLEAALRCDKLLKKPSPAIRLADATTIP
YVYTVWVHFPNFLSMFAGREQLFREIHYALKNAGIQIAPETYELHSRRADVIKVEPPTALVTLKKLDIANFLTDEELEQL
VRSSERLVFDAGTTIVAEGEVSHAFDIIVHGVVETSVNSGGTSSRMIGELKPGEYYGLYSMIADTPSFQQFAAATDVTVI
RVHIECIRALLQNRPDLSEEFARIVKQRMDNAQAVRLGADKTPARLTFQDIMRRLDALMR

Sequences:

>Translated_540_residues
MLNRATRGINPEPHSVVSMKDAIDRGRFGKGTLVNFLSSFEMLDGNFAISLSIALLTIAWLGLKLFFRKVPLGERYPKLA
VTADLVVLPLATLLVGRLTYNAHKWLELGDLSAFINALTLFTLLIVLGWCCARLVELFVLSKRKNDDATYLPGLQRGLLF
AGFLLASAIAFFNIMDYSVTGIYLSTGALAALIAFAMQKTLGDLFSGIALSVEHPFRLGDYIELEDGTQGQITDINWRAT
RLRGWDNATVVVPNSTLAQQRINNMHGTNHPYAEWYEIKIPAEVDPTMAKALLLEAALRCDKLLKKPSPAIRLADATTIP
YVYTVWVHFPNFLSMFAGREQLFREIHYALKNAGIQIAPETYELHSRRADVIKVEPPTALVTLKKLDIANFLTDEELEQL
VRSSERLVFDAGTTIVAEGEVSHAFDIIVHGVVETSVNSGGTSSRMIGELKPGEYYGLYSMIADTPSFQQFAAATDVTVI
RVHIECIRALLQNRPDLSEEFARIVKQRMDNAQAVRLGADKTPARLTFQDIMRRLDALMR
>Mature_540_residues
MLNRATRGINPEPHSVVSMKDAIDRGRFGKGTLVNFLSSFEMLDGNFAISLSIALLTIAWLGLKLFFRKVPLGERYPKLA
VTADLVVLPLATLLVGRLTYNAHKWLELGDLSAFINALTLFTLLIVLGWCCARLVELFVLSKRKNDDATYLPGLQRGLLF
AGFLLASAIAFFNIMDYSVTGIYLSTGALAALIAFAMQKTLGDLFSGIALSVEHPFRLGDYIELEDGTQGQITDINWRAT
RLRGWDNATVVVPNSTLAQQRINNMHGTNHPYAEWYEIKIPAEVDPTMAKALLLEAALRCDKLLKKPSPAIRLADATTIP
YVYTVWVHFPNFLSMFAGREQLFREIHYALKNAGIQIAPETYELHSRRADVIKVEPPTALVTLKKLDIANFLTDEELEQL
VRSSERLVFDAGTTIVAEGEVSHAFDIIVHGVVETSVNSGGTSSRMIGELKPGEYYGLYSMIADTPSFQQFAAATDVTVI
RVHIECIRALLQNRPDLSEEFARIVKQRMDNAQAVRLGADKTPARLTFQDIMRRLDALMR

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI2367355, Length=147, Percent_Identity=29.2517006802721, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1789291, Length=221, Percent_Identity=25.7918552036199, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 60110; Mature: 60110

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS50042 CNMP_BINDING_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRATRGINPEPHSVVSMKDAIDRGRFGKGTLVNFLSSFEMLDGNFAISLSIALLTIAW
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHH
LGLKLFFRKVPLGERYPKLAVTADLVVLPLATLLVGRLTYNAHKWLELGDLSAFINALTL
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
FTLLIVLGWCCARLVELFVLSKRKNDDATYLPGLQRGLLFAGFLLASAIAFFNIMDYSVT
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEE
GIYLSTGALAALIAFAMQKTLGDLFSGIALSVEHPFRLGDYIELEDGTQGQITDINWRAT
EEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCEEEECCCCCCCEEECCEEEE
RLRGWDNATVVVPNSTLAQQRINNMHGTNHPYAEWYEIKIPAEVDPTMAKALLLEAALRC
EECCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
DKLLKKPSPAIRLADATTIPYVYTVWVHFPNFLSMFAGREQLFREIHYALKNAGIQIAPE
HHHHHCCCCCEEEECCCCCCEEEEHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCC
TYELHSRRADVIKVEPPTALVTLKKLDIANFLTDEELEQLVRSSERLVFDAGTTIVAEGE
HHHHHCCCCCEEEECCCCEEEEEHHHHHHHHCCHHHHHHHHHCCCCEEEECCCEEEECCC
VSHAFDIIVHGVVETSVNSGGTSSRMIGELKPGEYYGLYSMIADTPSFQQFAAATDVTVI
HHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCHHHHHHHHHCCCCHHHHHHHCCHHEE
RVHIECIRALLQNRPDLSEEFARIVKQRMDNAQAVRLGADKTPARLTFQDIMRRLDALMR
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEHHHHHHHHHHHCC
>Mature Secondary Structure
MLNRATRGINPEPHSVVSMKDAIDRGRFGKGTLVNFLSSFEMLDGNFAISLSIALLTIAW
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHH
LGLKLFFRKVPLGERYPKLAVTADLVVLPLATLLVGRLTYNAHKWLELGDLSAFINALTL
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
FTLLIVLGWCCARLVELFVLSKRKNDDATYLPGLQRGLLFAGFLLASAIAFFNIMDYSVT
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEE
GIYLSTGALAALIAFAMQKTLGDLFSGIALSVEHPFRLGDYIELEDGTQGQITDINWRAT
EEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCEEEECCCCCCCEEECCEEEE
RLRGWDNATVVVPNSTLAQQRINNMHGTNHPYAEWYEIKIPAEVDPTMAKALLLEAALRC
EECCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
DKLLKKPSPAIRLADATTIPYVYTVWVHFPNFLSMFAGREQLFREIHYALKNAGIQIAPE
HHHHHCCCCCEEEECCCCCCEEEEHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCC
TYELHSRRADVIKVEPPTALVTLKKLDIANFLTDEELEQLVRSSERLVFDAGTTIVAEGE
HHHHHCCCCCEEEECCCCEEEEEHHHHHHHHCCHHHHHHHHHCCCCEEEECCCEEEECCC
VSHAFDIIVHGVVETSVNSGGTSSRMIGELKPGEYYGLYSMIADTPSFQQFAAATDVTVI
HHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCHHHHHHHHHCCCCHHHHHHHCCHHEE
RVHIECIRALLQNRPDLSEEFARIVKQRMDNAQAVRLGADKTPARLTFQDIMRRLDALMR
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 3042771 [H]