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The map label for this gene is yiaN [C]

Identifier: 110679590

GI number: 110679590

Start: 2233176

End: 2234576

Strand: Direct

Name: yiaN [C]

Synonym: RD1_2335

Alternate gene names: 110679590

Gene position: 2233176-2234576 (Clockwise)

Preceding gene: 110679589

Following gene: 110679592

Centisome position: 54.03

GC content: 59.67

Gene sequence:

>1401_bases
ATGGAGCCAATCGACATCGGGTTGTGGGTCAGCGGAGGGCTGCTGGTCTTTGTGATCCTTGGCATGCGCGTGGCCTTTGC
GGCGGGTCTGGCCGGGTTCGTTGGGCTGGTCTGGCTGCGCTGGAACGGCTTTGATTATGATCCTGAACGGTTCTGGAAGG
CGGTCGAGATCAGCGTCAAGATCGCGGGCCTCACGCCGCATTCCAAAGTGTCCGCACAGGTGCTGAGCCTGATCCCCGTG
TTCATCATGATCGGCTATCTGGCCTATCATGCCAAACTGACCACGGCGCTGTTTACCGCCTGCAAACGCTGGATCGCATG
GGTGCCCGGTGGGCTTGCGGTGTCAACGGTATTCGCCACCGCCGGCTTTGCGGCTGTGTCAGGCGCATCGGTGGCGACGG
CGGCGGTCTTTGCCCGCATTGCCATCCCCGAAATGCTGAAGATCGGGTACAACAAACAATTTGCAGCCGGTGTTGTGGCC
GCCGGTGGCACGCTGGCCTCGCTGATCCCGCCATCGGCGATTCTGGTGATCTATGCCATCATCGTGGAACAGGACGTGGG
CATGTTGCTGCTCGCGGGGTTTATCCCCGGTATGTTCTCCGCGCTGGTCTATGCAACGCTGATCATCGGTATCGCGGTCA
TTTTCAAATCCGTCGGGCCGCCGGTCAGCGGGTTTACCTGGCGCGAACGGTTTGAATCGCTGCCGCCCGCCTTGCCCATT
GTGGCGGTGGTCGTGATCATCGTGTTTTTTGTCTACAACCCTTTCGGAGATGCCTGGGGCACCCCGACCGAAGGGGGGGC
CATCGGCGCTTTCATCATCTTCCTGATGGCCCTTTACCGGGGCATGCGCTGGTCGCAGCTTAAAACCGCCTTGCTGGATA
CCGCGAAACTCACCGTGATGATCTTTTCGATCATCTGGGGAGTGTTGATCTACGTCCGCTTTCTCGGCTTTGCCGAACTG
CCCGAAGCCTTTGCGGGCTGGATCACCGGTCTGGATATGTCGCCCATGCTGATCCTTGTGTGCATCCTGTTGGCCTATGC
CATCCTCGGCATGTTCATGGATGCGATCGGCATGCTGCTGTTGACGCTGCCGGTGGTGTACCCGGCGGTTATGGCGCTGA
ATGGTGGTGAATACGTGACCGCTGCGGACAGTGCTTTCGGGATGTCCGGGCCCATGTGTGCGATCTGGTTCGGCATTCTG
GTGGTCAAGATGGCGGAGTTCTGTCTGATCACGCCGCCCATCGGTCTGAACTGTTTCGTGGTTGCCGGGGTGCGCGATGA
TCTGAATGTGCAGGATGTGTTCAAGGGTGTGACGCCGTTCTTTCTGGCCGATGCTGTCACCATCGCGCTGTTGGTCGCCT
TTCCCGCTATCGTGCTGTTTTTGCCGTCGCTGGCGGGCTAG

Upstream 100 bases:

>100_bases
CTTTGGTGCTGGGGCTTGAAAACCCCGTTGCGGTCCCGCTGAACCTGACCATTGCCGAGCAGGCCCGCATTGAGGCCGAA
GCGCTGGAAGGGGCCGACTG

Downstream 100 bases:

>100_bases
AGCGTCTGACGAAATACCTGACGCATCAAGTATTACGTAACGCGTTGAAATCCTTGATTGCAGGCGGCGTTATGTGGTTC
AGTTTTTGCGCATGACGCTT

Product: TRAP dicarboxylate transporter, DctM subunit, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MEPIDIGLWVSGGLLVFVILGMRVAFAAGLAGFVGLVWLRWNGFDYDPERFWKAVEISVKIAGLTPHSKVSAQVLSLIPV
FIMIGYLAYHAKLTTALFTACKRWIAWVPGGLAVSTVFATAGFAAVSGASVATAAVFARIAIPEMLKIGYNKQFAAGVVA
AGGTLASLIPPSAILVIYAIIVEQDVGMLLLAGFIPGMFSALVYATLIIGIAVIFKSVGPPVSGFTWRERFESLPPALPI
VAVVVIIVFFVYNPFGDAWGTPTEGGAIGAFIIFLMALYRGMRWSQLKTALLDTAKLTVMIFSIIWGVLIYVRFLGFAEL
PEAFAGWITGLDMSPMLILVCILLAYAILGMFMDAIGMLLLTLPVVYPAVMALNGGEYVTAADSAFGMSGPMCAIWFGIL
VVKMAEFCLITPPIGLNCFVVAGVRDDLNVQDVFKGVTPFFLADAVTIALLVAFPAIVLFLPSLAG

Sequences:

>Translated_466_residues
MEPIDIGLWVSGGLLVFVILGMRVAFAAGLAGFVGLVWLRWNGFDYDPERFWKAVEISVKIAGLTPHSKVSAQVLSLIPV
FIMIGYLAYHAKLTTALFTACKRWIAWVPGGLAVSTVFATAGFAAVSGASVATAAVFARIAIPEMLKIGYNKQFAAGVVA
AGGTLASLIPPSAILVIYAIIVEQDVGMLLLAGFIPGMFSALVYATLIIGIAVIFKSVGPPVSGFTWRERFESLPPALPI
VAVVVIIVFFVYNPFGDAWGTPTEGGAIGAFIIFLMALYRGMRWSQLKTALLDTAKLTVMIFSIIWGVLIYVRFLGFAEL
PEAFAGWITGLDMSPMLILVCILLAYAILGMFMDAIGMLLLTLPVVYPAVMALNGGEYVTAADSAFGMSGPMCAIWFGIL
VVKMAEFCLITPPIGLNCFVVAGVRDDLNVQDVFKGVTPFFLADAVTIALLVAFPAIVLFLPSLAG
>Mature_466_residues
MEPIDIGLWVSGGLLVFVILGMRVAFAAGLAGFVGLVWLRWNGFDYDPERFWKAVEISVKIAGLTPHSKVSAQVLSLIPV
FIMIGYLAYHAKLTTALFTACKRWIAWVPGGLAVSTVFATAGFAAVSGASVATAAVFARIAIPEMLKIGYNKQFAAGVVA
AGGTLASLIPPSAILVIYAIIVEQDVGMLLLAGFIPGMFSALVYATLIIGIAVIFKSVGPPVSGFTWRERFESLPPALPI
VAVVVIIVFFVYNPFGDAWGTPTEGGAIGAFIIFLMALYRGMRWSQLKTALLDTAKLTVMIFSIIWGVLIYVRFLGFAEL
PEAFAGWITGLDMSPMLILVCILLAYAILGMFMDAIGMLLLTLPVVYPAVMALNGGEYVTAADSAFGMSGPMCAIWFGIL
VVKMAEFCLITPPIGLNCFVVAGVRDDLNVQDVFKGVTPFFLADAVTIALLVAFPAIVLFLPSLAG

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=431, Percent_Identity=28.0742459396752, Blast_Score=89, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 49650; Mature: 49650

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPIDIGLWVSGGLLVFVILGMRVAFAAGLAGFVGLVWLRWNGFDYDPERFWKAVEISVK
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHEEEEE
IAGLTPHSKVSAQVLSLIPVFIMIGYLAYHAKLTTALFTACKRWIAWVPGGLAVSTVFAT
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
AGFAAVSGASVATAAVFARIAIPEMLKIGYNKQFAAGVVAAGGTLASLIPPSAILVIYAI
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHHH
IVEQDVGMLLLAGFIPGMFSALVYATLIIGIAVIFKSVGPPVSGFTWRERFESLPPALPI
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHH
VAVVVIIVFFVYNPFGDAWGTPTEGGAIGAFIIFLMALYRGMRWSQLKTALLDTAKLTVM
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
IFSIIWGVLIYVRFLGFAELPEAFAGWITGLDMSPMLILVCILLAYAILGMFMDAIGMLL
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LTLPVVYPAVMALNGGEYVTAADSAFGMSGPMCAIWFGILVVKMAEFCLITPPIGLNCFV
HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCEEE
VAGVRDDLNVQDVFKGVTPFFLADAVTIALLVAFPAIVLFLPSLAG
EECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEPIDIGLWVSGGLLVFVILGMRVAFAAGLAGFVGLVWLRWNGFDYDPERFWKAVEISVK
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHEEEEE
IAGLTPHSKVSAQVLSLIPVFIMIGYLAYHAKLTTALFTACKRWIAWVPGGLAVSTVFAT
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
AGFAAVSGASVATAAVFARIAIPEMLKIGYNKQFAAGVVAAGGTLASLIPPSAILVIYAI
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHHH
IVEQDVGMLLLAGFIPGMFSALVYATLIIGIAVIFKSVGPPVSGFTWRERFESLPPALPI
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHH
VAVVVIIVFFVYNPFGDAWGTPTEGGAIGAFIIFLMALYRGMRWSQLKTALLDTAKLTVM
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
IFSIIWGVLIYVRFLGFAELPEAFAGWITGLDMSPMLILVCILLAYAILGMFMDAIGMLL
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LTLPVVYPAVMALNGGEYVTAADSAFGMSGPMCAIWFGILVVKMAEFCLITPPIGLNCFV
HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCEEE
VAGVRDDLNVQDVFKGVTPFFLADAVTIALLVAFPAIVLFLPSLAG
EECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]