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The map label for this gene is aglR [H]

Identifier: 110679577

GI number: 110679577

Start: 2214636

End: 2215664

Strand: Reverse

Name: aglR [H]

Synonym: RD1_2320

Alternate gene names: 110679577

Gene position: 2215664-2214636 (Counterclockwise)

Preceding gene: 110679586

Following gene: 110679576

Centisome position: 53.61

GC content: 61.13

Gene sequence:

>1029_bases
TTGAACCTCAGAGAATTGTCAAAACGGCTGAAACTGTCGCAAACGACGGTCAGTCGCGCCCTGAACGGATACCCCGAAGT
CAATGAGGCGACCCGCAAGCGTGTGACGGAAGCCGCTGAAAAGTACCATTACCGCCCCAATGTGCGCGCCCAGACCCTCG
CTACGGGCAAATCCAGATCGGTGGGCCATGTGATCCCCCTGTCCAAGCAAAGCGAGTTGGTCAATATGGTGTTTTCGGAT
TTCATGGCTGGCGCGGGGCTGGTCTATGCCGAACATGGCTACACCATGACCCTGTCGATTGTTCGGGATGACGATGAACT
GGACTCCTATAGCGCCTTTGCGGAACGGGGTGCGGTAGATGGGGTCATCGTGCAGGGCCCGACCTGTGATGATCCGCGCA
TTGCCCGCCTGCTCGAACTGAACATCCCCTTCATGGTGCACGGGCGGGCCTCCGGGATCGACACGCCCTATGCGTGGCTG
GACGTGAACAACCACCGCGCCATCAAGGCAGCGACACAACATCTGATTGACCTTGGCCACAGACGCATCGCCCTGATCAA
CGGGCGCGCGCAAATGGACTTCGCGGTGCGCAGGCGCGCCGGTTATGAGGCTGCACTGGCGGGTTCGGGGATCGCGGCGG
ATGCGTGCCTTGTGCGGTCCGGCGACATGTCGGAGCCCAATGGCTACATGGCGGCCTTCGAAAGCCTTGCACAACAGAAC
CCGCCGACGGCCTTTGTCGCCTCCTCCATCGTGATCGCCCTCGGGGTGAAACGCGCCATCGAAGAACGCGGGCTGCGCAT
CGGCAAGGACGTGTCGGTGATCTGCTTTGACGATGATATCTCCTATTTGCCCAATGCCGGGCGCACGCCGCAGTTTACGG
CGATGCGCTCCTCGGTGCAGGCCGCCGGTGCACGCTGCGCGACCCTGCTGCTTGAACGGATCAAAACACCCGGCACCGAA
CTGCCCTGCGAACTGTGGGAAGCTGAATTTGTCCAGGGTGCTTCCACTGGCCCCGGTCCTTACGCATAA

Upstream 100 bases:

>100_bases
GCGCTTTGAGAATGGCGCGGCTGGTGGCATGATATCCGGTGACTCGACGCATGCGCCCCTCGGCCATGCACCCCTGTGAT
GCCACCAATGAGGCCGGACC

Downstream 100 bases:

>100_bases
AGGTATCCCCATCATGAAGTTTTCCCGCAGCAGCTTTCCGCCGGGCTTCCTGTTTGCCGCCGCAACCTCCAGCTATCAGA
TCGAAGGACATGGGTTCGGG

Product: transcriptional regulator, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MNLRELSKRLKLSQTTVSRALNGYPEVNEATRKRVTEAAEKYHYRPNVRAQTLATGKSRSVGHVIPLSKQSELVNMVFSD
FMAGAGLVYAEHGYTMTLSIVRDDDELDSYSAFAERGAVDGVIVQGPTCDDPRIARLLELNIPFMVHGRASGIDTPYAWL
DVNNHRAIKAATQHLIDLGHRRIALINGRAQMDFAVRRRAGYEAALAGSGIAADACLVRSGDMSEPNGYMAAFESLAQQN
PPTAFVASSIVIALGVKRAIEERGLRIGKDVSVICFDDDISYLPNAGRTPQFTAMRSSVQAAGARCATLLLERIKTPGTE
LPCELWEAEFVQGASTGPGPYA

Sequences:

>Translated_342_residues
MNLRELSKRLKLSQTTVSRALNGYPEVNEATRKRVTEAAEKYHYRPNVRAQTLATGKSRSVGHVIPLSKQSELVNMVFSD
FMAGAGLVYAEHGYTMTLSIVRDDDELDSYSAFAERGAVDGVIVQGPTCDDPRIARLLELNIPFMVHGRASGIDTPYAWL
DVNNHRAIKAATQHLIDLGHRRIALINGRAQMDFAVRRRAGYEAALAGSGIAADACLVRSGDMSEPNGYMAAFESLAQQN
PPTAFVASSIVIALGVKRAIEERGLRIGKDVSVICFDDDISYLPNAGRTPQFTAMRSSVQAAGARCATLLLERIKTPGTE
LPCELWEAEFVQGASTGPGPYA
>Mature_342_residues
MNLRELSKRLKLSQTTVSRALNGYPEVNEATRKRVTEAAEKYHYRPNVRAQTLATGKSRSVGHVIPLSKQSELVNMVFSD
FMAGAGLVYAEHGYTMTLSIVRDDDELDSYSAFAERGAVDGVIVQGPTCDDPRIARLLELNIPFMVHGRASGIDTPYAWL
DVNNHRAIKAATQHLIDLGHRRIALINGRAQMDFAVRRRAGYEAALAGSGIAADACLVRSGDMSEPNGYMAAFESLAQQN
PPTAFVASSIVIALGVKRAIEERGLRIGKDVSVICFDDDISYLPNAGRTPQFTAMRSSVQAAGARCATLLLERIKTPGTE
LPCELWEAEFVQGASTGPGPYA

Specific function: Probable regulatory protein for the binding-protein- dependent transport system for alpha-glucosides such as sucrose, maltose and trehalose [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=338, Percent_Identity=26.3313609467456, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787948, Length=345, Percent_Identity=28.1159420289855, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789068, Length=290, Percent_Identity=29.6551724137931, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1788474, Length=312, Percent_Identity=27.2435897435897, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1786540, Length=293, Percent_Identity=28.6689419795222, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787580, Length=305, Percent_Identity=23.9344262295082, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790194, Length=319, Percent_Identity=24.4514106583072, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789202, Length=294, Percent_Identity=27.5510204081633, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1789456, Length=332, Percent_Identity=28.9156626506024, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI48994940, Length=328, Percent_Identity=24.0853658536585, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787906, Length=289, Percent_Identity=26.9896193771626, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37144; Mature: 37144

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLRELSKRLKLSQTTVSRALNGYPEVNEATRKRVTEAAEKYHYRPNVRAQTLATGKSRS
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHEECCCCCC
VGHVIPLSKQSELVNMVFSDFMAGAGLVYAEHGYTMTLSIVRDDDELDSYSAFAERGAVD
CCEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEECCCHHHHHHHHHHCCCCC
GVIVQGPTCDDPRIARLLELNIPFMVHGRASGIDTPYAWLDVNNHRAIKAATQHLIDLGH
CEEEECCCCCCHHHHHHEEECCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCC
RRIALINGRAQMDFAVRRRAGYEAALAGSGIAADACLVRSGDMSEPNGYMAAFESLAQQN
CEEEEECCCCHHHHHHHHHCCCCHHHCCCCCCHHHEEEECCCCCCCCHHHHHHHHHHHCC
PPTAFVASSIVIALGVKRAIEERGLRIGKDVSVICFDDDISYLPNAGRTPQFTAMRSSVQ
CCHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHH
AAGARCATLLLERIKTPGTELPCELWEAEFVQGASTGPGPYA
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNLRELSKRLKLSQTTVSRALNGYPEVNEATRKRVTEAAEKYHYRPNVRAQTLATGKSRS
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHEECCCCCC
VGHVIPLSKQSELVNMVFSDFMAGAGLVYAEHGYTMTLSIVRDDDELDSYSAFAERGAVD
CCEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEECCCHHHHHHHHHHCCCCC
GVIVQGPTCDDPRIARLLELNIPFMVHGRASGIDTPYAWLDVNNHRAIKAATQHLIDLGH
CEEEECCCCCCHHHHHHEEECCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCC
RRIALINGRAQMDFAVRRRAGYEAALAGSGIAADACLVRSGDMSEPNGYMAAFESLAQQN
CEEEEECCCCHHHHHHHHHCCCCHHHCCCCCCHHHEEEECCCCCCCCHHHHHHHHHHHCC
PPTAFVASSIVIALGVKRAIEERGLRIGKDVSVICFDDDISYLPNAGRTPQFTAMRSSVQ
CCHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHH
AAGARCATLLLERIKTPGTELPCELWEAEFVQGASTGPGPYA
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10400573; 11481430 [H]