Click here to switch to the map view.

The map label for this gene is ybeQ [C]

Identifier: 110679575

GI number: 110679575

Start: 2211462

End: 2211932

Strand: Reverse

Name: ybeQ [C]

Synonym: RD1_2316

Alternate gene names: 110679575

Gene position: 2211932-2211462 (Counterclockwise)

Preceding gene: 110679576

Following gene: 110679568

Centisome position: 53.52

GC content: 60.3

Gene sequence:

>471_bases
ATGCGCACAATAGCTTTTGCCCTCGCTCTTTTGGCCACGCCGGTTGCGGCGGAATTGGAAGCGGCGCGCGATCTCATGGA
TGCGGGTCGATTTGACGAGGCCTATGCAGCACTTTGGCCCGCGGCGCGTTCGGGCAATGCCGAAGCGGAAGAACTGATCG
GTGTCATCTATGCCATGGGTCTGGGACGGCCCCGCGATGACCAGCGCGCGTTTGAATGGTATCTGCGCGCGGCCATGAAG
GGCCATCCCGGTGCGCAATCGGGTGTCGGCTGGTACTACGAAGTGGGTCGCGGCCTGCCCGCACCGGACCTGATGCGCGC
CTATATGTGGTACACGCTTTCCGCGATTGGCGGGGACCCGGACGCGGCAATCAGCCTTGAAGAGGTTGCCAAGAAAATGA
CGGCGGAAGAAATCAACAAGGCCCATGTTCTCGTCGCTGACTATAAGGTGTGGATGTATCCGTTCAGATGA

Upstream 100 bases:

>100_bases
CGGCTTGCGCTACGTCGAATTCGATGAAATCCTCATCTGTCAGCGGCGGCAGTAAATCTGCGGCGGCGGCCAGTGATGCA
AAACAGGACAGAACAAGCCC

Downstream 100 bases:

>100_bases
TCGGGGCGACCCGGAGGCCGCCCTTTCGTGGTCAATTCAGATCGGCGGCACGCGCCGCACCGACTTCGGCTTCGGCCTGC
GCCACGGCCTCTGTCAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: Sel1 Repeat Family; Sel1 Domain Protein Repeat-Containing Protein; Sel1 Domain-Containing Protein; Sel1 Repeat Family Protein; TPR Repeat Protein; Sodium-Type Flagellar Motor Component; TPR Repeat-Containing Protein; Tetratricopeptide TPR-Like Helical Protein; Sel1 Domain-Containing Protein Repeat-Containing Protein; Sel1-Like Repeat-Containing Serine/Threonine Protein Kinase

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MRTIAFALALLATPVAAELEAARDLMDAGRFDEAYAALWPAARSGNAEAEELIGVIYAMGLGRPRDDQRAFEWYLRAAMK
GHPGAQSGVGWYYEVGRGLPAPDLMRAYMWYTLSAIGGDPDAAISLEEVAKKMTAEEINKAHVLVADYKVWMYPFR

Sequences:

>Translated_156_residues
MRTIAFALALLATPVAAELEAARDLMDAGRFDEAYAALWPAARSGNAEAEELIGVIYAMGLGRPRDDQRAFEWYLRAAMK
GHPGAQSGVGWYYEVGRGLPAPDLMRAYMWYTLSAIGGDPDAAISLEEVAKKMTAEEINKAHVLVADYKVWMYPFR
>Mature_156_residues
MRTIAFALALLATPVAAELEAARDLMDAGRFDEAYAALWPAARSGNAEAEELIGVIYAMGLGRPRDDQRAFEWYLRAAMK
GHPGAQSGVGWYYEVGRGLPAPDLMRAYMWYTLSAIGGDPDAAISLEEVAKKMTAEEINKAHVLVADYKVWMYPFR

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17219; Mature: 17219

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTIAFALALLATPVAAELEAARDLMDAGRFDEAYAALWPAARSGNAEAEELIGVIYAMG
CHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
LGRPRDDQRAFEWYLRAAMKGHPGAQSGVGWYYEVGRGLPAPDLMRAYMWYTLSAIGGDP
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC
DAAISLEEVAKKMTAEEINKAHVLVADYKVWMYPFR
CCEEEHHHHHHHHHHHHHCHHEEEEEEEEEEEECCC
>Mature Secondary Structure
MRTIAFALALLATPVAAELEAARDLMDAGRFDEAYAALWPAARSGNAEAEELIGVIYAMG
CHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
LGRPRDDQRAFEWYLRAAMKGHPGAQSGVGWYYEVGRGLPAPDLMRAYMWYTLSAIGGDP
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC
DAAISLEEVAKKMTAEEINKAHVLVADYKVWMYPFR
CCEEEHHHHHHHHHHHHHCHHEEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA