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The map label for this gene is yvoA [H]

Identifier: 110679568

GI number: 110679568

Start: 2205016

End: 2205693

Strand: Reverse

Name: yvoA [H]

Synonym: RD1_2309

Alternate gene names: 110679568

Gene position: 2205693-2205016 (Counterclockwise)

Preceding gene: 110679575

Following gene: 110679567

Centisome position: 53.37

GC content: 58.11

Gene sequence:

>678_bases
TTGCCCAAATACATCCAGCTTTGCGAACATATCATTCGCGAGATTGATGCCGGTCGTTTGCTGGACGCAGAACGCCTGCC
CCCCGAACGCGAAATGGCGCGCAGCTATAGTGTCTCCATCGGCACGCTGCGCAAGGCGCTTGCGGAATTGCATAAAAAGG
GGCTGTTGGAGCGGGTTCAGGGCTCCGGCAACTACATCCGCAAAGGCCACACGCCCACAGGTGTCTATGCCATGTTCCGG
CTTGAACTACCAGACGGGGGCGGCCTGCCAAGCGCGCGCATCCTGTCGCTTGAGGTGATGCAGAAACCCGCCACCCTGCC
CGGGTTCGGACGCTCGGATCAGGCAACGCGCATCAGACGTCTGCGCTTCCTGAACGATATCGCAATCGCCGTCGAAGAGA
TCTGGCTGGATGCGGCCGTTGGCACGCTGAATGCAAAAACCGTGTCTGATTCCCTTTATCAGACCTATCTGAAACACCTC
AACTTCTGGATTACGCGCGCGGAGGATCGCGTCTCTGTCGGCCGTTTTCCCGACTGGACATCCCCCGACTTTGCCCGGAT
GGACCAACCCTGCGGTTACATCGAACGCTTTAGCTGGGCAGAACATCCCGAAGCGGTGGAATTCTCGCGCACATGGTTTG
ACCCGAACCGCGCGGTATATGTGCAGCGTTTGAAATAA

Upstream 100 bases:

>100_bases
TTTTCTTGAATAGCACCGCGAAACATGTAGATCAATCATGTATCAATTTTCACCCACCCCGGTCGTTTGTTTGCAGGCAT
CACACGATACCCGAGGCGCT

Downstream 100 bases:

>100_bases
GGAGTCGCCCGATGACCCAACTGGTAAGATACGGCATCATTGGCTGCGGCATGATGGGGCAGGAACACCTGCGCAATATC
GCCCTGCTGGATGGCGCAGG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MPKYIQLCEHIIREIDAGRLLDAERLPPEREMARSYSVSIGTLRKALAELHKKGLLERVQGSGNYIRKGHTPTGVYAMFR
LELPDGGGLPSARILSLEVMQKPATLPGFGRSDQATRIRRLRFLNDIAIAVEEIWLDAAVGTLNAKTVSDSLYQTYLKHL
NFWITRAEDRVSVGRFPDWTSPDFARMDQPCGYIERFSWAEHPEAVEFSRTWFDPNRAVYVQRLK

Sequences:

>Translated_225_residues
MPKYIQLCEHIIREIDAGRLLDAERLPPEREMARSYSVSIGTLRKALAELHKKGLLERVQGSGNYIRKGHTPTGVYAMFR
LELPDGGGLPSARILSLEVMQKPATLPGFGRSDQATRIRRLRFLNDIAIAVEEIWLDAAVGTLNAKTVSDSLYQTYLKHL
NFWITRAEDRVSVGRFPDWTSPDFARMDQPCGYIERFSWAEHPEAVEFSRTWFDPNRAVYVQRLK
>Mature_224_residues
PKYIQLCEHIIREIDAGRLLDAERLPPEREMARSYSVSIGTLRKALAELHKKGLLERVQGSGNYIRKGHTPTGVYAMFRL
ELPDGGGLPSARILSLEVMQKPATLPGFGRSDQATRIRRLRFLNDIAIAVEEIWLDAAVGTLNAKTVSDSLYQTYLKHLN
FWITRAEDRVSVGRFPDWTSPDFARMDQPCGYIERFSWAEHPEAVEFSRTWFDPNRAVYVQRLK

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 25764; Mature: 25633

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKYIQLCEHIIREIDAGRLLDAERLPPEREMARSYSVSIGTLRKALAELHKKGLLERVQ
CCHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
GSGNYIRKGHTPTGVYAMFRLELPDGGGLPSARILSLEVMQKPATLPGFGRSDQATRIRR
CCCCEEECCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LRFLNDIAIAVEEIWLDAAVGTLNAKTVSDSLYQTYLKHLNFWITRAEDRVSVGRFPDWT
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SPDFARMDQPCGYIERFSWAEHPEAVEFSRTWFDPNRAVYVQRLK
CCCHHHCCCCCCHHHHCCCCCCCCCHHHHHHEECCCCEEEEEECC
>Mature Secondary Structure 
PKYIQLCEHIIREIDAGRLLDAERLPPEREMARSYSVSIGTLRKALAELHKKGLLERVQ
CHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
GSGNYIRKGHTPTGVYAMFRLELPDGGGLPSARILSLEVMQKPATLPGFGRSDQATRIRR
CCCCEEECCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LRFLNDIAIAVEEIWLDAAVGTLNAKTVSDSLYQTYLKHLNFWITRAEDRVSVGRFPDWT
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SPDFARMDQPCGYIERFSWAEHPEAVEFSRTWFDPNRAVYVQRLK
CCCHHHCCCCCCHHHHCCCCCCCCCHHHHHHEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]