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The map label for this gene is ycbG [H]

Identifier: 110679546

GI number: 110679546

Start: 2179425

End: 2180183

Strand: Reverse

Name: ycbG [H]

Synonym: RD1_2283

Alternate gene names: 110679546

Gene position: 2180183-2179425 (Counterclockwise)

Preceding gene: 110679552

Following gene: 110679545

Centisome position: 52.75

GC content: 64.03

Gene sequence:

>759_bases
ATGAAAATTGATCCTGAAAACCCAGCCGATCTATCCGCCCAGATTGCAGCCGCGATCCGGGATGCCATCGTGGCTGGCAC
CTTGCTGGTGGATGCACGCCTGCCGTCGGAGGCGGAACTGGCGGAACACTTCGACGTCTCGCGCCCGACCGTGCGCGAGG
CACTCAAACGACTGGCGGCGCAATCGCTGATCCGCACGCAGCGCGGTGCCACCGGCGGGGCCTTTGTGAACCGGATTTCG
TTTCAGGACGCCTATCCGCAGCAAATCACCACCTCGACCCTATTGTTGTCGATGAATGCCGTCAGCTTCAGCACCGCCTG
CGAGGCGCGCTATGCGCTGGAACGCGCCTGTTCGCCCCTATCGGCAGAGCGGCGCACGGCGGATCACCTCGCGACCATGC
GGGCCGAAATTCACCGCCAGAATCAACCGGGGCTTACAGACGAAGCCTTTTGCGCCTCCGATGTCGCGTTCCACCGCGCG
CTTGTCGATGGCGCAGGCAACCCGGTGCTAAGCTATCAACTCGCCGGGGCGGTTGAGGCCATGCAGCCCTTGATGAACAT
GATCACCTTCACCGCCCGTGACCGCGCGCGTATCGTGGCACTGCATACGGCAATTGCCGATGCCATCGACGCGAGGGATG
CGGCGGCCACCTTCGACGGGCTGACTGCGTTGGAAAACGAAACGCAAACCCTCGCGCGCAGCGTTCTTGCCGCGCGTGCT
GCAGCCTCCGGGCGGTCCGCGAGCGCAACCTCCGCTTGA

Upstream 100 bases:

>100_bases
CAGAGGGTGGAGCGCATAATACCGTGCACGGGGGATTCCTTTTCCTTGCACTTCAAATGCCAGACAATTAGAAAACGGGC
AAACACTAAATGTAAGACAT

Downstream 100 bases:

>100_bases
TCGGTGCGCGATTGTTGGTAGGCTTTCCGTCATGGGAGCTTCGCGCGCCCGCGAAGGAGGCCAGATGCACGCCAACCGCA
GCCCAAAGCCCCGCAGCACC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MKIDPENPADLSAQIAAAIRDAIVAGTLLVDARLPSEAELAEHFDVSRPTVREALKRLAAQSLIRTQRGATGGAFVNRIS
FQDAYPQQITTSTLLLSMNAVSFSTACEARYALERACSPLSAERRTADHLATMRAEIHRQNQPGLTDEAFCASDVAFHRA
LVDGAGNPVLSYQLAGAVEAMQPLMNMITFTARDRARIVALHTAIADAIDARDAAATFDGLTALENETQTLARSVLAARA
AASGRSASATSA

Sequences:

>Translated_252_residues
MKIDPENPADLSAQIAAAIRDAIVAGTLLVDARLPSEAELAEHFDVSRPTVREALKRLAAQSLIRTQRGATGGAFVNRIS
FQDAYPQQITTSTLLLSMNAVSFSTACEARYALERACSPLSAERRTADHLATMRAEIHRQNQPGLTDEAFCASDVAFHRA
LVDGAGNPVLSYQLAGAVEAMQPLMNMITFTARDRARIVALHTAIADAIDARDAAATFDGLTALENETQTLARSVLAARA
AASGRSASATSA
>Mature_252_residues
MKIDPENPADLSAQIAAAIRDAIVAGTLLVDARLPSEAELAEHFDVSRPTVREALKRLAAQSLIRTQRGATGGAFVNRIS
FQDAYPQQITTSTLLLSMNAVSFSTACEARYALERACSPLSAERRTADHLATMRAEIHRQNQPGLTDEAFCASDVAFHRA
LVDGAGNPVLSYQLAGAVEAMQPLMNMITFTARDRARIVALHTAIADAIDARDAAATFDGLTALENETQTLARSVLAARA
AASGRSASATSA

Specific function: Repressor For The Dgorkat Operon. Binds D-Galactonate As An Inducer. [C]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=209, Percent_Identity=30.1435406698565, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1786303, Length=166, Percent_Identity=34.3373493975904, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26736; Mature: 26736

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDPENPADLSAQIAAAIRDAIVAGTLLVDARLPSEAELAEHFDVSRPTVREALKRLAA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHCCCCHHHHHHHHHHHH
QSLIRTQRGATGGAFVNRISFQDAYPQQITTSTLLLSMNAVSFSTACEARYALERACSPL
HHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SAERRTADHLATMRAEIHRQNQPGLTDEAFCASDVAFHRALVDGAGNPVLSYQLAGAVEA
CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHH
MQPLMNMITFTARDRARIVALHTAIADAIDARDAAATFDGLTALENETQTLARSVLAARA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AASGRSASATSA
HCCCCCCCCCCC
>Mature Secondary Structure
MKIDPENPADLSAQIAAAIRDAIVAGTLLVDARLPSEAELAEHFDVSRPTVREALKRLAA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHCCCCHHHHHHHHHHHH
QSLIRTQRGATGGAFVNRISFQDAYPQQITTSTLLLSMNAVSFSTACEARYALERACSPL
HHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SAERRTADHLATMRAEIHRQNQPGLTDEAFCASDVAFHRALVDGAGNPVLSYQLAGAVEA
CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHH
MQPLMNMITFTARDRARIVALHTAIADAIDARDAAATFDGLTALENETQTLARSVLAARA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AASGRSASATSA
HCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704254; 9384377 [H]