Click here to switch to the map view.

The map label for this gene is 110679500

Identifier: 110679500

GI number: 110679500

Start: 2133116

End: 2133631

Strand: Direct

Name: 110679500

Synonym: RD1_2231

Alternate gene names: NA

Gene position: 2133116-2133631 (Clockwise)

Preceding gene: 110679499

Following gene: 110679501

Centisome position: 51.61

GC content: 53.88

Gene sequence:

>516_bases
ATGGTCGCTTTCCCCAGCCTCAAAAACTTGGTCCCCGCACAACGGTTTGGAAGGTTGAAGACATCCGCGCACTTTTTGAA
GGTGACGCTGATGGCTAAGTATCCGAACCCCATGTTGGTGAAAGCATCCCGCACCTATGACGTGATCGAAGCAGCCAATG
CGCTTGGACGGACGCCCGCAACCATCCGGCACTGGATCAAGGATGGGTTAGAGATCATGGCGTCGCGCAAACCGTATCTG
ATCCTTGGTCAAGCGATCCGCGATTACATCAAGGCAAAATCGGCGTCACGGAAAAGACCACTCGCGCCAGACGAAATCTA
CTGCCTGTCTTGCAAAGCCGGACGCACACCGCTCGCTATGTCAGTCACCTTGAGTGCACAAACCAGTAAAACCAGCAGGA
TCAACGGCCTTTGCGGGACCTGCGGCGCACCAATGTCGCGGATCATATCCGCTAAGGACGAACCTCTTTTCTTCCAAGTG
TTCGGGTTCAAAAGAAAACGCGCCAGAAGAGACTAA

Upstream 100 bases:

>100_bases
CCAGCATTCCCCAAGACCGGACTTGTTCGCCTTTCCCAGATTTTAGCGCCCGCCGGGCCTATACCGGTTTCCAAGTCTGC
ATGGTGGCAAGGCGTAAAGG

Downstream 100 bases:

>100_bases
TAGATACCGGCTCTTACCGTTTGAACAACACATCTGAAGGAGATGAACGGACATGAGAAAAGTAAACGAGGAAAACGAGC
GGATAAAGCGAAAATACTTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MVAFPSLKNLVPAQRFGRLKTSAHFLKVTLMAKYPNPMLVKASRTYDVIEAANALGRTPATIRHWIKDGLEIMASRKPYL
ILGQAIRDYIKAKSASRKRPLAPDEIYCLSCKAGRTPLAMSVTLSAQTSKTSRINGLCGTCGAPMSRIISAKDEPLFFQV
FGFKRKRARRD

Sequences:

>Translated_171_residues
MVAFPSLKNLVPAQRFGRLKTSAHFLKVTLMAKYPNPMLVKASRTYDVIEAANALGRTPATIRHWIKDGLEIMASRKPYL
ILGQAIRDYIKAKSASRKRPLAPDEIYCLSCKAGRTPLAMSVTLSAQTSKTSRINGLCGTCGAPMSRIISAKDEPLFFQV
FGFKRKRARRD
>Mature_171_residues
MVAFPSLKNLVPAQRFGRLKTSAHFLKVTLMAKYPNPMLVKASRTYDVIEAANALGRTPATIRHWIKDGLEIMASRKPYL
ILGQAIRDYIKAKSASRKRPLAPDEIYCLSCKAGRTPLAMSVTLSAQTSKTSRINGLCGTCGAPMSRIISAKDEPLFFQV
FGFKRKRARRD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19018; Mature: 19018

Theoretical pI: Translated: 11.19; Mature: 11.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAFPSLKNLVPAQRFGRLKTSAHFLKVTLMAKYPNPMLVKASRTYDVIEAANALGRTPA
CCCCCCHHHCCCHHHHCCHHCCCEEEEEEEEEECCCCEEEEECCCHHHHHHHHHHCCCHH
TIRHWIKDGLEIMASRKPYLILGQAIRDYIKAKSASRKRPLAPDEIYCLSCKAGRTPLAM
HHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEE
SVTLSAQTSKTSRINGLCGTCGAPMSRIISAKDEPLFFQVFGFKRKRARRD
EEEEECCCCCCHHCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHHHCCCC
>Mature Secondary Structure
MVAFPSLKNLVPAQRFGRLKTSAHFLKVTLMAKYPNPMLVKASRTYDVIEAANALGRTPA
CCCCCCHHHCCCHHHHCCHHCCCEEEEEEEEEECCCCEEEEECCCHHHHHHHHHHCCCHH
TIRHWIKDGLEIMASRKPYLILGQAIRDYIKAKSASRKRPLAPDEIYCLSCKAGRTPLAM
HHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEE
SVTLSAQTSKTSRINGLCGTCGAPMSRIISAKDEPLFFQVFGFKRKRARRD
EEEEECCCCCCHHCCCCCCCCCCCHHHHHCCCCCCEEEEEECCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA