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The map label for this gene is rbsB [H]

Identifier: 110679484

GI number: 110679484

Start: 2114263

End: 2115279

Strand: Reverse

Name: rbsB [H]

Synonym: RD1_2213

Alternate gene names: 110679484

Gene position: 2115279-2114263 (Counterclockwise)

Preceding gene: 110679487

Following gene: 110679483

Centisome position: 51.18

GC content: 59.29

Gene sequence:

>1017_bases
ATGAAAAGACTTATCGCTGGCACCGCATTGGCGCTGATTGCATCCGCAAGCACCGCCGTGGCGGACGATTCCGTTTCCGC
GTGCCTGATTACAAAAACAGACACGAACCCCTTCTTTGTCAAAATGCGCGAAGGCGCTGCCGCCAAGGCCGAAGAACTGG
GGATTACGCTGAACTCCTATGCAGGCAAGGTCGACGGCGACCATGAAACGCAGGTCGCTGCAATCGAAACCTGCATCGCG
AATGGCGCGGATGGCATTCTGCTGACAGCTTCAGACACGTCCTCGATTGTGCCTGCGGTGCAGCAGGCCCGCGACGCCGG
ACTGCTGGTGATCGCGCTGGATACGCCGCTTGAACCCATTGACTCAGCCGATATGACCTTTGCGACGGATAACTTTCTGG
CTGGTGAATTGATTGGCAAATGGGCGGCCGCAACCTTGGGGGATGATGCAGCGAATGCGAAAATCGCCATGCTGGATCTG
GCCGTGAGCCAACCCTCCGTCGGGGTTCTGCGCGATCAGGGCTTCATGACCGGCTTCGGGATCGACGTCAAAGACCCCAA
CCGTTGGGGTGACGAGGACGACCCGCGTATTGTTGGCCATGACGTGACCGCCGGAAACGAGGAAGGCGGGCGTCGCGCCA
TGGAAAACCTGCTGGCCAAGGACCCGATGATCAACGTGGTCTATACGATCAACGAACCGGCGGCAGCGGGTGCCTATGAA
GCGTTGAAATCCATTGGCCGTGAAAACGACGTCTTGATCGTTTCGGTCGATGGCGGCTGCCCCGGCGTGCAGAATGTGGC
GGACGGCGTGATCGGCGCGACCTCCCAGCAATATCCGCTGCTGATGGCCTCCAAGGGTATCGAGGCGATTGCGAATTGGG
CCAAAGACGGCAGCAAGCCCGAAGCCACTGAAGGCAAAGGGTTCTTTGACACAGGCGTTGCCTTGGTGACGGACCAGCCC
GTGGACGGTGTGGACAGCATCGACACCAAAGAGGGCATGGATCTGTGCTGGGGTTGA

Upstream 100 bases:

>100_bases
ATCAAGTTTACTTATTAATTGACTCGCGCCGCGATTTAGCGCACCGTCCGGCCTCAAGCACGTCAGACAACGTGTGTACA
AATTGGTTTGGGAGGATCAC

Downstream 100 bases:

>100_bases
TCCGCGGGTCGCAATAATCTTACCTGAGATAAGAGGGGGGCGCGTCTGAACCCGCCCCCCTTGGTTGTTCAAAACCAGAT
GTCACGGCATCTCAACAAGG

Product: sugar ABC transporter protein, putative

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MKRLIAGTALALIASASTAVADDSVSACLITKTDTNPFFVKMREGAAAKAEELGITLNSYAGKVDGDHETQVAAIETCIA
NGADGILLTASDTSSIVPAVQQARDAGLLVIALDTPLEPIDSADMTFATDNFLAGELIGKWAAATLGDDAANAKIAMLDL
AVSQPSVGVLRDQGFMTGFGIDVKDPNRWGDEDDPRIVGHDVTAGNEEGGRRAMENLLAKDPMINVVYTINEPAAAGAYE
ALKSIGRENDVLIVSVDGGCPGVQNVADGVIGATSQQYPLLMASKGIEAIANWAKDGSKPEATEGKGFFDTGVALVTDQP
VDGVDSIDTKEGMDLCWG

Sequences:

>Translated_338_residues
MKRLIAGTALALIASASTAVADDSVSACLITKTDTNPFFVKMREGAAAKAEELGITLNSYAGKVDGDHETQVAAIETCIA
NGADGILLTASDTSSIVPAVQQARDAGLLVIALDTPLEPIDSADMTFATDNFLAGELIGKWAAATLGDDAANAKIAMLDL
AVSQPSVGVLRDQGFMTGFGIDVKDPNRWGDEDDPRIVGHDVTAGNEEGGRRAMENLLAKDPMINVVYTINEPAAAGAYE
ALKSIGRENDVLIVSVDGGCPGVQNVADGVIGATSQQYPLLMASKGIEAIANWAKDGSKPEATEGKGFFDTGVALVTDQP
VDGVDSIDTKEGMDLCWG
>Mature_338_residues
MKRLIAGTALALIASASTAVADDSVSACLITKTDTNPFFVKMREGAAAKAEELGITLNSYAGKVDGDHETQVAAIETCIA
NGADGILLTASDTSSIVPAVQQARDAGLLVIALDTPLEPIDSADMTFATDNFLAGELIGKWAAATLGDDAANAKIAMLDL
AVSQPSVGVLRDQGFMTGFGIDVKDPNRWGDEDDPRIVGHDVTAGNEEGGRRAMENLLAKDPMINVVYTINEPAAAGAYE
ALKSIGRENDVLIVSVDGGCPGVQNVADGVIGATSQQYPLLMASKGIEAIANWAKDGSKPEATEGKGFFDTGVALVTDQP
VDGVDSIDTKEGMDLCWG

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=313, Percent_Identity=29.3929712460064, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790674, Length=264, Percent_Identity=28.7878787878788, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790526, Length=311, Percent_Identity=24.7588424437299, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35004; Mature: 35004

Theoretical pI: Translated: 4.00; Mature: 4.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLIAGTALALIASASTAVADDSVSACLITKTDTNPFFVKMREGAAAKAEELGITLNSY
CCCHHHHHHHHHHHCCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCCHHHHCEEEECC
AGKVDGDHETQVAAIETCIANGADGILLTASDTSSIVPAVQQARDAGLLVIALDTPLEPI
CCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCC
DSADMTFATDNFLAGELIGKWAAATLGDDAANAKIAMLDLAVSQPSVGVLRDQGFMTGFG
CCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCEEEECCCCEEECC
IDVKDPNRWGDEDDPRIVGHDVTAGNEEGGRRAMENLLAKDPMINVVYTINEPAAAGAYE
EECCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHH
ALKSIGRENDVLIVSVDGGCPGVQNVADGVIGATSQQYPLLMASKGIEAIANWAKDGSKP
HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEHHCCHHHHHHHHHCCCCC
EATEGKGFFDTGVALVTDQPVDGVDSIDTKEGMDLCWG
CCCCCCCEECCCEEEEECCCCCCCCCCCCCCCCHHCCC
>Mature Secondary Structure
MKRLIAGTALALIASASTAVADDSVSACLITKTDTNPFFVKMREGAAAKAEELGITLNSY
CCCHHHHHHHHHHHCCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCCHHHHCEEEECC
AGKVDGDHETQVAAIETCIANGADGILLTASDTSSIVPAVQQARDAGLLVIALDTPLEPI
CCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCC
DSADMTFATDNFLAGELIGKWAAATLGDDAANAKIAMLDLAVSQPSVGVLRDQGFMTGFG
CCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCEEEECCCCEEECC
IDVKDPNRWGDEDDPRIVGHDVTAGNEEGGRRAMENLLAKDPMINVVYTINEPAAAGAYE
EECCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHH
ALKSIGRENDVLIVSVDGGCPGVQNVADGVIGATSQQYPLLMASKGIEAIANWAKDGSKP
HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEHHCCHHHHHHHHHCCCCC
EATEGKGFFDTGVALVTDQPVDGVDSIDTKEGMDLCWG
CCCCCCCEECCCEEEEECCCCCCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]