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The map label for this gene is rbcS [H]

Identifier: 110679483

GI number: 110679483

Start: 2113091

End: 2114152

Strand: Reverse

Name: rbcS [H]

Synonym: RD1_2212

Alternate gene names: 110679483

Gene position: 2114152-2113091 (Counterclockwise)

Preceding gene: 110679484

Following gene: 110679482

Centisome position: 51.15

GC content: 59.23

Gene sequence:

>1062_bases
ATGTCCGGACCCGACAATTACGAGGCCGCAAGCGCGGATGCCGCGAATGAAATTGCCTCGTTTGATACAGGCAAGAAGGG
GATTGTCAGCCGCTTTCACCATGCGCTGCATACAACCCCTGCCCTTGTCCCGCTCATCGTCCTGCTTGCATCCATTGCCA
TCTTTGGCGTCTTGCTGGGCACGCGGTTCTTTTCGCCCTTCGCGCTGACGCTGATCCTGCAACAGGTGCAGATCGTCGGC
ATTGTGGCGGCAGCGCAAAGCCTTGTGATCCTGACCGCCGGCATTGACCTCAGCGTCGGGGCCATCGCCGTGATCTCATC
GGTTGTGATGGGACAATTCAGTTTTCGCTACGGGGTGCCGGTTGAGGTTGCAATCGTCTGTGGTCTGGCGTTTGGCACAA
TGATCGGTGCCGTGAATGGCTGGCTGATCGCGGTGATGAAACTGCCCCCATTCATCGTGACGCTGGGCATGTGGCAAATC
GTGCTGGCGGCGAATTTCCTGTATTCCGCGAATGAAACAATCCGAAGTCAGGACATCGCGGAACAGGCCCCGATGCTGCA
ATTGATGGGTGCGAAGTTCAATGTGGGCGGCGCGGTCTTTACCTTTGGTGTGGTCTTTATGCTGGTCCTTGTGCTGGTGC
TGGCCTATGTGCTCAAACACACGGCTTGGGGGCGGCACGTCTATGCGGTGGGCGATGATCCCGAAGCTGCCGCCCTGTCC
GGGGTGAATGTCAAGAAGACGCTGATTTCTGTCTATGCGCTGGCCGGTTTGATCTGCGCCTTTGCCGGATGGGCACTGAT
CGGGCGGATCGGCTCGGTCTCCCCCACGTCAGGACAGCTGTTGAACATCGAAAGCATCACCGCCGTGGTGATCGGGGGGA
TTTCGCTGTTTGGCGGGCGCGGGTCGATCCTTGGGACGTTCTTTGGCGCGCTGATCGTCGGGGTTTTCACGCTCGGCCTG
CGTCTGCTCGGTGCGGATGCGCAATGGACATTCCTGCTGATCGGGGCGCTGATCATCGCCGCGGTGGCGGTTGACCAATG
GATCAGGAAGGTGGCGGCATAA

Upstream 100 bases:

>100_bases
GCAATAATCTTACCTGAGATAAGAGGGGGGCGCGTCTGAACCCGCCCCCCTTGGTTGTTCAAAACCAGATGTCACGGCAT
CTCAACAAGGAGAGACCGCA

Downstream 100 bases:

>100_bases
TGGAACCGATTTTGAAGGGCCGCGGGCTGGTCAAACGCTACGGCAAGGTTACAGCGCTTGATCATTGTGACTTTGACCTG
ATGCCGGGCGAAATACTGGC

Product: ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MSGPDNYEAASADAANEIASFDTGKKGIVSRFHHALHTTPALVPLIVLLASIAIFGVLLGTRFFSPFALTLILQQVQIVG
IVAAAQSLVILTAGIDLSVGAIAVISSVVMGQFSFRYGVPVEVAIVCGLAFGTMIGAVNGWLIAVMKLPPFIVTLGMWQI
VLAANFLYSANETIRSQDIAEQAPMLQLMGAKFNVGGAVFTFGVVFMLVLVLVLAYVLKHTAWGRHVYAVGDDPEAAALS
GVNVKKTLISVYALAGLICAFAGWALIGRIGSVSPTSGQLLNIESITAVVIGGISLFGGRGSILGTFFGALIVGVFTLGL
RLLGADAQWTFLLIGALIIAAVAVDQWIRKVAA

Sequences:

>Translated_353_residues
MSGPDNYEAASADAANEIASFDTGKKGIVSRFHHALHTTPALVPLIVLLASIAIFGVLLGTRFFSPFALTLILQQVQIVG
IVAAAQSLVILTAGIDLSVGAIAVISSVVMGQFSFRYGVPVEVAIVCGLAFGTMIGAVNGWLIAVMKLPPFIVTLGMWQI
VLAANFLYSANETIRSQDIAEQAPMLQLMGAKFNVGGAVFTFGVVFMLVLVLVLAYVLKHTAWGRHVYAVGDDPEAAALS
GVNVKKTLISVYALAGLICAFAGWALIGRIGSVSPTSGQLLNIESITAVVIGGISLFGGRGSILGTFFGALIVGVFTLGL
RLLGADAQWTFLLIGALIIAAVAVDQWIRKVAA
>Mature_352_residues
SGPDNYEAASADAANEIASFDTGKKGIVSRFHHALHTTPALVPLIVLLASIAIFGVLLGTRFFSPFALTLILQQVQIVGI
VAAAQSLVILTAGIDLSVGAIAVISSVVMGQFSFRYGVPVEVAIVCGLAFGTMIGAVNGWLIAVMKLPPFIVTLGMWQIV
LAANFLYSANETIRSQDIAEQAPMLQLMGAKFNVGGAVFTFGVVFMLVLVLVLAYVLKHTAWGRHVYAVGDDPEAAALSG
VNVKKTLISVYALAGLICAFAGWALIGRIGSVSPTSGQLLNIESITAVVIGGISLFGGRGSILGTFFGALIVGVFTLGLR
LLGADAQWTFLLIGALIIAAVAVDQWIRKVAA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=317, Percent_Identity=36.2776025236593, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1790524, Length=299, Percent_Identity=31.7725752508361, Blast_Score=121, Evalue=8e-29,
Organism=Escherichia coli, GI1788896, Length=271, Percent_Identity=34.6863468634686, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787794, Length=284, Percent_Identity=31.6901408450704, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788471, Length=295, Percent_Identity=33.2203389830508, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789992, Length=135, Percent_Identity=38.5185185185185, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082395, Length=289, Percent_Identity=29.757785467128, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693214, Length=275, Percent_Identity=32.3636363636364, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI145693152, Length=216, Percent_Identity=31.0185185185185, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787793, Length=298, Percent_Identity=30.5369127516779, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36802; Mature: 36671

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGPDNYEAASADAANEIASFDTGKKGIVSRFHHALHTTPALVPLIVLLASIAIFGVLLG
CCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
TRFFSPFALTLILQQVQIVGIVAAAQSLVILTAGIDLSVGAIAVISSVVMGQFSFRYGVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC
VEVAIVCGLAFGTMIGAVNGWLIAVMKLPPFIVTLGMWQIVLAANFLYSANETIRSQDIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
EQAPMLQLMGAKFNVGGAVFTFGVVFMLVLVLVLAYVLKHTAWGRHVYAVGDDPEAAALS
HHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHC
GVNVKKTLISVYALAGLICAFAGWALIGRIGSVSPTSGQLLNIESITAVVIGGISLFGGR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCC
GSILGTFFGALIVGVFTLGLRLLGADAQWTFLLIGALIIAAVAVDQWIRKVAA
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SGPDNYEAASADAANEIASFDTGKKGIVSRFHHALHTTPALVPLIVLLASIAIFGVLLG
CCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
TRFFSPFALTLILQQVQIVGIVAAAQSLVILTAGIDLSVGAIAVISSVVMGQFSFRYGVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC
VEVAIVCGLAFGTMIGAVNGWLIAVMKLPPFIVTLGMWQIVLAANFLYSANETIRSQDIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
EQAPMLQLMGAKFNVGGAVFTFGVVFMLVLVLVLAYVLKHTAWGRHVYAVGDDPEAAALS
HHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHC
GVNVKKTLISVYALAGLICAFAGWALIGRIGSVSPTSGQLLNIESITAVVIGGISLFGGR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCC
GSILGTFFGALIVGVFTLGLRLLGADAQWTFLLIGALIIAAVAVDQWIRKVAA
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]