| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is icd [H]
Identifier: 110679477
GI number: 110679477
Start: 2103330
End: 2105552
Strand: Reverse
Name: icd [H]
Synonym: RD1_2204
Alternate gene names: 110679477
Gene position: 2105552-2103330 (Counterclockwise)
Preceding gene: 110679478
Following gene: 110679475
Centisome position: 50.94
GC content: 59.69
Gene sequence:
>2223_bases ATGTCCGATACAACCACTCCCGACATCATCTACACCAAAGTTGACGAGGCACCGCAGCTCGCATCCGCGTCGCTTCTGCC GATCATCCGCAAGTTCGCAGCCGCCGCCGGCGTTTCGGTGGGGGTCAAGGATATCTCGCTCGCCGGGCGCATCCTCGCCG CATTCCCCGAGCATTTGTCAGCCGATCAACGCCAAAGCGATGATTTGGCGGAACTGGGTAAACTGGTGAAGACACCAGAT GCCAATGTCATCAAACTGCCGAATATTTCCGCCTCGGTCCCGCAACTGGTCGCTGCGATCGAGGAACTGCAAGCGCAAGG ATACCCGGTGCCGGACTATCCGGAAAACCCGCAGACAGAGGCCGACAAGGACGCGCGCGCGCGCTACGACACGATCAAGG GGTCCGCAGTCAACCCGGTGCTGCGCGAAGGAAACTCGGACCGTCGTGCCGCAGTTGCCGTGAAGAATTACGCCCAATCC AACCCGCATTCCATGGGCGCATGGTCGAAAGACAGCAAAACCCGCGTCAGCACCATGAGCGCCAATGACTTTCGATCCAA TGAAACATCCGTGACCCTGAGTGCCGCGCAGGCAGGCCCTGCCAAGATCGAACTGATCGGCGCGGATGGTGCCGTGACAG TGCTGAAAGACGGCATTGATTTTCCGGCAGGCACAGTGGTCGATGCCACCTTCATGTCTGCCAAGGCGCTCTCGGCTTTC CTCGAGGCACAGATTGAGGCCACCAAGGCAGAGGGTACGTTGTTCTCGATCCACCTCAAAGCCACGATGATGAAGGTGTC CGACCCGATCATCTTTGGTCATGCGGTCAAAGCCTATCTGAAACCGATCTTTGCCGAATATGGCGATGCTTTTGCTGCGG CCGGAATTGATGCAAACTCCGGTATGGGCGAGGTGCTGGACCGCATCAAGGACTTGCCGCAAGGTGCTGAAATCCTGTCG AAAGTGGATGCGCTGATGCAGCAGCAGCCCCCGATGTACATGGTGAATTCCGACAAGGGCATCACCAATTTGCACGTCCC CTCCGATGTGATCATCGACGCCTCCATGCCCGCGCTGATCCGTGCCGGCGGCAAAGGCTGGGGGCCGGACGGGGCCGAAG CGGATGCAAATTGCGTCATTCCTGACAGCTCCTATGCGGCGGTCTATGAGGAATCGGTGAATTTCTGCAAGACCAATGGC GCGATCGACCCTGCCACTGTGGGCACCGTGCAAAACGTGGGCCTGATGGCGCAAAAGGCCGAGGAATACGGCTCGCACCC GACCACTTTCGAAATCCCCCATGACGGGACGGTGCGCATGAGCGCCGCCAACGGTGATGTTCTGCACGAACATACGGTCG AGGCTGGCGACATCTGGCGTTCCGCCTCCACCCGCCAGGCCCCGATCGAGGACTGGGTACAACTGGCGATCGACCGCCAG AAGGCCGAAGGGTGTCAGGCGATCTTCTGGCTCGACGAAGATCGCGCCCACGATGCGGAGCTGATCGCCTATGTGAAACC CTTGCTTGCCGCTGCGGGGGCCACCGACAAATTCCAGATCCTCGCCCCCCGCGAGGCCACACGCCTGTCCTTTGAAACCA TTGCCAAGGGCGAAAACAGCATTGCCGTCACCGGCAACGTGCTGCGCGACTATCTGACGGACCTGTTCCCGATCCTTGAG TTGGGCACATCGGCCAAGATGTTGTCGATCGTGAAACTGATGCAGGGCGGTGGTCTGTTTGAGACCGGTGCAGGTGGGTC AGCCCCAAAGCACGTGCAGCAACTGGTCGAGGAAAACCACCTGCGCTGGGACAGCCTTGGTGAATTCTGCGCCTTGGGGG AAAGCCTGAAGTTTCTGGCAGACGTCAAAGGCAACGAAAAGGCCCGCGTGCTCGGAAAGGCCGTAGACGTGGCGACCCAA GGCATTCTGGATCACAACAAATCACCCGGCCGCCGGGTTGGTCAGCCCGACAACCGCGACAGCCACTTCTATTTTGCGCT CTATTGGGCGCAGGCACTGGCCGCGCAGACCGACGATGCGGAACTTGCAGCCAGTTTTGCGCCCATCGCAGCGGCACTGG CCGAGAATGAGGCCGCGATTGTGGCTGATTTTGCCAAAGTACAGGGCGCGCCTGCCGACATCGGTGGCTATTTTCACACC GATGACGCCAAGACCGCTGCCGTGATGCGACCGTCACAGGTTCTGAACAAAATTCTGGCCTGA
Upstream 100 bases:
>100_bases CATGGGGTGCGGCGTATCCGCTCTGTTACCGCAACACGCTGTGGACCTGCGCAGAACGGTCGGTTAATCAACGCCAACTG ACATGAAAGGCTTGGAATCT
Downstream 100 bases:
>100_bases GCCACGAATTGACCGCTGAAAAAGCCCCGGCGCGCGACATCGCCGGGGCTTTTTTTGTACCCAGCCCGGTTCTGTCAACT TTCGTACCGGGTGGAGCCGC
Product: isocitrate dehydrogenase, NADP-dependent
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 740; Mature: 739
Protein sequence:
>740_residues MSDTTTPDIIYTKVDEAPQLASASLLPIIRKFAAAAGVSVGVKDISLAGRILAAFPEHLSADQRQSDDLAELGKLVKTPD ANVIKLPNISASVPQLVAAIEELQAQGYPVPDYPENPQTEADKDARARYDTIKGSAVNPVLREGNSDRRAAVAVKNYAQS NPHSMGAWSKDSKTRVSTMSANDFRSNETSVTLSAAQAGPAKIELIGADGAVTVLKDGIDFPAGTVVDATFMSAKALSAF LEAQIEATKAEGTLFSIHLKATMMKVSDPIIFGHAVKAYLKPIFAEYGDAFAAAGIDANSGMGEVLDRIKDLPQGAEILS KVDALMQQQPPMYMVNSDKGITNLHVPSDVIIDASMPALIRAGGKGWGPDGAEADANCVIPDSSYAAVYEESVNFCKTNG AIDPATVGTVQNVGLMAQKAEEYGSHPTTFEIPHDGTVRMSAANGDVLHEHTVEAGDIWRSASTRQAPIEDWVQLAIDRQ KAEGCQAIFWLDEDRAHDAELIAYVKPLLAAAGATDKFQILAPREATRLSFETIAKGENSIAVTGNVLRDYLTDLFPILE LGTSAKMLSIVKLMQGGGLFETGAGGSAPKHVQQLVEENHLRWDSLGEFCALGESLKFLADVKGNEKARVLGKAVDVATQ GILDHNKSPGRRVGQPDNRDSHFYFALYWAQALAAQTDDAELAASFAPIAAALAENEAAIVADFAKVQGAPADIGGYFHT DDAKTAAVMRPSQVLNKILA
Sequences:
>Translated_740_residues MSDTTTPDIIYTKVDEAPQLASASLLPIIRKFAAAAGVSVGVKDISLAGRILAAFPEHLSADQRQSDDLAELGKLVKTPD ANVIKLPNISASVPQLVAAIEELQAQGYPVPDYPENPQTEADKDARARYDTIKGSAVNPVLREGNSDRRAAVAVKNYAQS NPHSMGAWSKDSKTRVSTMSANDFRSNETSVTLSAAQAGPAKIELIGADGAVTVLKDGIDFPAGTVVDATFMSAKALSAF LEAQIEATKAEGTLFSIHLKATMMKVSDPIIFGHAVKAYLKPIFAEYGDAFAAAGIDANSGMGEVLDRIKDLPQGAEILS KVDALMQQQPPMYMVNSDKGITNLHVPSDVIIDASMPALIRAGGKGWGPDGAEADANCVIPDSSYAAVYEESVNFCKTNG AIDPATVGTVQNVGLMAQKAEEYGSHPTTFEIPHDGTVRMSAANGDVLHEHTVEAGDIWRSASTRQAPIEDWVQLAIDRQ KAEGCQAIFWLDEDRAHDAELIAYVKPLLAAAGATDKFQILAPREATRLSFETIAKGENSIAVTGNVLRDYLTDLFPILE LGTSAKMLSIVKLMQGGGLFETGAGGSAPKHVQQLVEENHLRWDSLGEFCALGESLKFLADVKGNEKARVLGKAVDVATQ GILDHNKSPGRRVGQPDNRDSHFYFALYWAQALAAQTDDAELAASFAPIAAALAENEAAIVADFAKVQGAPADIGGYFHT DDAKTAAVMRPSQVLNKILA >Mature_739_residues SDTTTPDIIYTKVDEAPQLASASLLPIIRKFAAAAGVSVGVKDISLAGRILAAFPEHLSADQRQSDDLAELGKLVKTPDA NVIKLPNISASVPQLVAAIEELQAQGYPVPDYPENPQTEADKDARARYDTIKGSAVNPVLREGNSDRRAAVAVKNYAQSN PHSMGAWSKDSKTRVSTMSANDFRSNETSVTLSAAQAGPAKIELIGADGAVTVLKDGIDFPAGTVVDATFMSAKALSAFL EAQIEATKAEGTLFSIHLKATMMKVSDPIIFGHAVKAYLKPIFAEYGDAFAAAGIDANSGMGEVLDRIKDLPQGAEILSK VDALMQQQPPMYMVNSDKGITNLHVPSDVIIDASMPALIRAGGKGWGPDGAEADANCVIPDSSYAAVYEESVNFCKTNGA IDPATVGTVQNVGLMAQKAEEYGSHPTTFEIPHDGTVRMSAANGDVLHEHTVEAGDIWRSASTRQAPIEDWVQLAIDRQK AEGCQAIFWLDEDRAHDAELIAYVKPLLAAAGATDKFQILAPREATRLSFETIAKGENSIAVTGNVLRDYLTDLFPILEL GTSAKMLSIVKLMQGGGLFETGAGGSAPKHVQQLVEENHLRWDSLGEFCALGESLKFLADVKGNEKARVLGKAVDVATQG ILDHNKSPGRRVGQPDNRDSHFYFALYWAQALAAQTDDAELAASFAPIAAALAENEAAIVADFAKVQGAPADIGGYFHTD DAKTAAVMRPSQVLNKILA
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 78637; Mature: 78506
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTTTPDIIYTKVDEAPQLASASLLPIIRKFAAAAGVSVGVKDISLAGRILAAFPEHLS CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC ADQRQSDDLAELGKLVKTPDANVIKLPNISASVPQLVAAIEELQAQGYPVPDYPENPQTE CCCCCCCCHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC ADKDARARYDTIKGSAVNPVLREGNSDRRAAVAVKNYAQSNPHSMGAWSKDSKTRVSTMS CCHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC ANDFRSNETSVTLSAAQAGPAKIELIGADGAVTVLKDGIDFPAGTVVDATFMSAKALSAF CCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH LEAQIEATKAEGTLFSIHLKATMMKVSDPIIFGHAVKAYLKPIFAEYGDAFAAAGIDANS HHHHHHHEECCCEEEEEEEEEEEEHHCCCEEEHHHHHHHHHHHHHHHCCHHEECCCCCCC GMGEVLDRIKDLPQGAEILSKVDALMQQQPPMYMVNSDKGITNLHVPSDVIIDASMPALI CHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEEECCCCHHH RAGGKGWGPDGAEADANCVIPDSSYAAVYEESVNFCKTNGAIDPATVGTVQNVGLMAQKA HCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH EEYGSHPTTFEIPHDGTVRMSAANGDVLHEHTVEAGDIWRSASTRQAPIEDWVQLAIDRQ HHHCCCCCEEECCCCCEEEEECCCCCEEHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH KAEGCQAIFWLDEDRAHDAELIAYVKPLLAAAGATDKFQILAPREATRLSFETIAKGENS HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCC IAVTGNVLRDYLTDLFPILELGTSAKMLSIVKLMQGGGLFETGAGGSAPKHVQQLVEENH EEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCC LRWDSLGEFCALGESLKFLADVKGNEKARVLGKAVDVATQGILDHNKSPGRRVGQPDNRD CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC SHFYFALYWAQALAAQTDDAELAASFAPIAAALAENEAAIVADFAKVQGAPADIGGYFHT CCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCCCCCCCEEEC DDAKTAAVMRPSQVLNKILA CCCCHHHHCCHHHHHHHHCC >Mature Secondary Structure SDTTTPDIIYTKVDEAPQLASASLLPIIRKFAAAAGVSVGVKDISLAGRILAAFPEHLS CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC ADQRQSDDLAELGKLVKTPDANVIKLPNISASVPQLVAAIEELQAQGYPVPDYPENPQTE CCCCCCCCHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC ADKDARARYDTIKGSAVNPVLREGNSDRRAAVAVKNYAQSNPHSMGAWSKDSKTRVSTMS CCHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC ANDFRSNETSVTLSAAQAGPAKIELIGADGAVTVLKDGIDFPAGTVVDATFMSAKALSAF CCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH LEAQIEATKAEGTLFSIHLKATMMKVSDPIIFGHAVKAYLKPIFAEYGDAFAAAGIDANS HHHHHHHEECCCEEEEEEEEEEEEHHCCCEEEHHHHHHHHHHHHHHHCCHHEECCCCCCC GMGEVLDRIKDLPQGAEILSKVDALMQQQPPMYMVNSDKGITNLHVPSDVIIDASMPALI CHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEEECCCCHHH RAGGKGWGPDGAEADANCVIPDSSYAAVYEESVNFCKTNGAIDPATVGTVQNVGLMAQKA HCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH EEYGSHPTTFEIPHDGTVRMSAANGDVLHEHTVEAGDIWRSASTRQAPIEDWVQLAIDRQ HHHCCCCCEEECCCCCEEEEECCCCCEEHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH KAEGCQAIFWLDEDRAHDAELIAYVKPLLAAAGATDKFQILAPREATRLSFETIAKGENS HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCC IAVTGNVLRDYLTDLFPILELGTSAKMLSIVKLMQGGGLFETGAGGSAPKHVQQLVEENH EEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCC LRWDSLGEFCALGESLKFLADVKGNEKARVLGKAVDVATQGILDHNKSPGRRVGQPDNRD CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC SHFYFALYWAQALAAQTDDAELAASFAPIAAALAENEAAIVADFAKVQGAPADIGGYFHT CCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCCCCCCCEEEC DDAKTAAVMRPSQVLNKILA CCCCHHHHCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]