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The map label for this gene is 110679476

Identifier: 110679476

GI number: 110679476

Start: 2101849

End: 2103255

Strand: Direct

Name: 110679476

Synonym: RD1_2203

Alternate gene names: NA

Gene position: 2101849-2103255 (Clockwise)

Preceding gene: 110679469

Following gene: 110679479

Centisome position: 50.85

GC content: 58.85

Gene sequence:

>1407_bases
ATGAGTAAAACACTTGTCGGACCGCAGTTGCGACAACTCAGGCGGTCGTTTAATCACACGCAGGCAGAAATGGCGCGCCA
GCTTGGTGTCTCCGCCGCCTATATCAACCTGCTTGAGAACAACCAGCGCAGCCTGTCCGTCAAGATGTTGATGGAACTGA
CCGAAAGCTACGGCATTGATTGGCGCAGCCTGGTCAATGACAGCGAAATCACGCATCTGGCCGATCTGCGCACAGCGGTG
CGCGACCCGATTTTCGAAGGCGATACGCCGGATTTACAGGAAATGCGCGCAGCGCTGGACCATGCGCCCAAACTGGTCGA
TCTGTTTTTGCAGCTTTATCGCAATCACGCGAAACTGCGCGACAACATGCGCAGTGTCACCGCAGCCGGTGGCGTTGCGG
AGATGATGGTGACCTCGCCGGAAACGGCGATCTATGATTTTTTTCGCAACCACGCCAATTATTTCAGCGATCTCGAACTG
GCGGCGGATTCGGCCCGCAGTGCTGTGGGTGGGCGGCAGGACGACATTTACGGCAACCTCAAACGGCACCTCAAAAATGC
CTTTGGTATTGAGGTGGAGATCATGGGTGTGGACAAGATGCCCGAGGCCCTGCGCATTTTCGCCGAAGATCAGGGGCGCG
TTGAGCTTTCCGAGGCGCTGGATCAGATCAACCGGAATTTCCAGCTGGCCCATGTTCTGGCGCTGGTCAGCTGTGCGGGA
TTGCTGGATAAGTTATCCGCCAGCGCGCAAATTCCGACGCAAAAGGGTCAGGCGCGTTGCCGGGTGGAACTGGCCAACTA
CTTCGCCGCGGCCTTCATGATGCCCTATGACGATGTGCTGCGGGTCGCACGAGACACGCAGTATGACATAGACCGGATCG
CGACCACCTTTGGCGTGTCCTTTGAGCAAGCGTGCCAACGGCTCACCACGCTACAACGCAAGGGGGCGCAGGGCGTACCG
TTTTTCTTTTTGCGCACCGATACATCGGGCAATGTGACGAAACGCTTCAATGCCACCGCCTTCACCCTTGCGGAGCAGGG
CGGTTCCTGTCCGGTATGGAACATCCACAGCGCCTTCATCTCGCCGGGGCGTATCGTGGCGCAAATGGTCGAACTGCCGG
ATGCCGGGCAGTTTTTCACCATCAGCCGCACCTCAGACCGGCCTGTGGTCAGTCGCCACACGCCGGACCGGCGGCGCGTT
GTGACCTTGGGGTGCGAACGCGCGCATGTGGATCAGATCGGCTATGCGGCCCCGCTGAACATCGAAGACCGTGCCAACAT
CGCTAAAATCGGCATCAACTGTCACATTTGCCCGCGTCAGGCCTGTTCGGAACGCGCGCATGAGCCCTTGCATGTCAACC
TGCCGGTGGATGCCAACCGGCGCGGCTCCACCCGGTACGAAAGTTGA

Upstream 100 bases:

>100_bases
TGACGAAGCTACATAGACCCGCGAAATATTATTTCACGAAAATACGTGTTCGGATGTTAATTATTGCATTAACGAAATTA
TTTCTTGTAAACTTGTTAAT

Downstream 100 bases:

>100_bases
CAGAACCGGGCTGGGTACAAAAAAAGCCCCGGCGATGTCGCGCGCCGGGGCTTTTTCAGCGGTCAATTCGTGGCTCAGGC
CAGAATTTTGTTCAGAACCT

Product: transcriptional regulator, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MSKTLVGPQLRQLRRSFNHTQAEMARQLGVSAAYINLLENNQRSLSVKMLMELTESYGIDWRSLVNDSEITHLADLRTAV
RDPIFEGDTPDLQEMRAALDHAPKLVDLFLQLYRNHAKLRDNMRSVTAAGGVAEMMVTSPETAIYDFFRNHANYFSDLEL
AADSARSAVGGRQDDIYGNLKRHLKNAFGIEVEIMGVDKMPEALRIFAEDQGRVELSEALDQINRNFQLAHVLALVSCAG
LLDKLSASAQIPTQKGQARCRVELANYFAAAFMMPYDDVLRVARDTQYDIDRIATTFGVSFEQACQRLTTLQRKGAQGVP
FFFLRTDTSGNVTKRFNATAFTLAEQGGSCPVWNIHSAFISPGRIVAQMVELPDAGQFFTISRTSDRPVVSRHTPDRRRV
VTLGCERAHVDQIGYAAPLNIEDRANIAKIGINCHICPRQACSERAHEPLHVNLPVDANRRGSTRYES

Sequences:

>Translated_468_residues
MSKTLVGPQLRQLRRSFNHTQAEMARQLGVSAAYINLLENNQRSLSVKMLMELTESYGIDWRSLVNDSEITHLADLRTAV
RDPIFEGDTPDLQEMRAALDHAPKLVDLFLQLYRNHAKLRDNMRSVTAAGGVAEMMVTSPETAIYDFFRNHANYFSDLEL
AADSARSAVGGRQDDIYGNLKRHLKNAFGIEVEIMGVDKMPEALRIFAEDQGRVELSEALDQINRNFQLAHVLALVSCAG
LLDKLSASAQIPTQKGQARCRVELANYFAAAFMMPYDDVLRVARDTQYDIDRIATTFGVSFEQACQRLTTLQRKGAQGVP
FFFLRTDTSGNVTKRFNATAFTLAEQGGSCPVWNIHSAFISPGRIVAQMVELPDAGQFFTISRTSDRPVVSRHTPDRRRV
VTLGCERAHVDQIGYAAPLNIEDRANIAKIGINCHICPRQACSERAHEPLHVNLPVDANRRGSTRYES
>Mature_467_residues
SKTLVGPQLRQLRRSFNHTQAEMARQLGVSAAYINLLENNQRSLSVKMLMELTESYGIDWRSLVNDSEITHLADLRTAVR
DPIFEGDTPDLQEMRAALDHAPKLVDLFLQLYRNHAKLRDNMRSVTAAGGVAEMMVTSPETAIYDFFRNHANYFSDLELA
ADSARSAVGGRQDDIYGNLKRHLKNAFGIEVEIMGVDKMPEALRIFAEDQGRVELSEALDQINRNFQLAHVLALVSCAGL
LDKLSASAQIPTQKGQARCRVELANYFAAAFMMPYDDVLRVARDTQYDIDRIATTFGVSFEQACQRLTTLQRKGAQGVPF
FFLRTDTSGNVTKRFNATAFTLAEQGGSCPVWNIHSAFISPGRIVAQMVELPDAGQFFTISRTSDRPVVSRHTPDRRRVV
TLGCERAHVDQIGYAAPLNIEDRANIAKIGINCHICPRQACSERAHEPLHVNLPVDANRRGSTRYES

Specific function: Unknown

COG id: COG3800

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018653
- InterPro:   IPR010359
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF09856 DUF2083; PF06114 DUF955; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 52318; Mature: 52187

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTLVGPQLRQLRRSFNHTQAEMARQLGVSAAYINLLENNQRSLSVKMLMELTESYGID
CCCCCCCHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
WRSLVNDSEITHLADLRTAVRDPIFEGDTPDLQEMRAALDHAPKLVDLFLQLYRNHAKLR
HHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
DNMRSVTAAGGVAEMMVTSPETAIYDFFRNHANYFSDLELAADSARSAVGGRQDDIYGNL
HHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
KRHLKNAFGIEVEIMGVDKMPEALRIFAEDQGRVELSEALDQINRNFQLAHVLALVSCAG
HHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHH
LLDKLSASAQIPTQKGQARCRVELANYFAAAFMMPYDDVLRVARDTQYDIDRIATTFGVS
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCC
FEQACQRLTTLQRKGAQGVPFFFLRTDTSGNVTKRFNATAFTLAEQGGSCPVWNIHSAFI
HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEECCCEEEEEECCCCCCCEEEHHHHHC
SPGRIVAQMVELPDAGQFFTISRTSDRPVVSRHTPDRRRVVTLGCERAHVDQIGYAAPLN
CCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCCCC
IEDRANIAKIGINCHICPRQACSERAHEPLHVNLPVDANRRGSTRYES
CCCCCCEEEECCEEEECCHHHHHHHCCCCEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKTLVGPQLRQLRRSFNHTQAEMARQLGVSAAYINLLENNQRSLSVKMLMELTESYGID
CCCCCCHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
WRSLVNDSEITHLADLRTAVRDPIFEGDTPDLQEMRAALDHAPKLVDLFLQLYRNHAKLR
HHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
DNMRSVTAAGGVAEMMVTSPETAIYDFFRNHANYFSDLELAADSARSAVGGRQDDIYGNL
HHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
KRHLKNAFGIEVEIMGVDKMPEALRIFAEDQGRVELSEALDQINRNFQLAHVLALVSCAG
HHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHH
LLDKLSASAQIPTQKGQARCRVELANYFAAAFMMPYDDVLRVARDTQYDIDRIATTFGVS
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCC
FEQACQRLTTLQRKGAQGVPFFFLRTDTSGNVTKRFNATAFTLAEQGGSCPVWNIHSAFI
HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEECCCEEEEEECCCCCCCEEEHHHHHC
SPGRIVAQMVELPDAGQFFTISRTSDRPVVSRHTPDRRRVVTLGCERAHVDQIGYAAPLN
CCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCCCC
IEDRANIAKIGINCHICPRQACSERAHEPLHVNLPVDANRRGSTRYES
CCCCCCEEEECCEEEECCHHHHHHHCCCCEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]