| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is ptsP [H]
Identifier: 110679432
GI number: 110679432
Start: 2053861
End: 2056104
Strand: Direct
Name: ptsP [H]
Synonym: RD1_2158
Alternate gene names: 110679432
Gene position: 2053861-2056104 (Clockwise)
Preceding gene: 110679431
Following gene: 110679433
Centisome position: 49.69
GC content: 60.87
Gene sequence:
>2244_bases GTGGCTGAACGTCTCGAGAGTGAATCGCGCAAACTGCTGGGGCGATTGCGCGATGCGATGGCAGGGCTCGCCGCCGGGCA GGAACGGCTGGATGAGATTACATCGCTGATCGCGGAAAGCATGGACTGTGACGTCTGTTCCATCTACCTGTTTCGCGATG CAGAAACGCTGGAGCTATGCGCCACCAAGGGCCTGAACAAAGAGGCCGTGCATAAGACACGCATGAAACTCGGTGAGGGT CTTGTGGGGCGTGTCGCCAAACAGCGCACCATCGTGAACACGCCCGATGCGCCGCAGGCCAAGGGTTTTCGCTACATGCC CGAAACCGGTGAAGAGGTTTTCTCCAGTTTCCTCGGTATACCGATCCAGCGCCTTGGTGATGCGTTGGGCGTGCTTGTGG TGCAGTCGCGCGCGGCGCGGGAGTTTTCCGCAGATGCCGTCTATGCCCTCGAAGTTGTTGCGATGGTACTGGCCGAGATG ACGGAACTTGGCGCTTTCGTGGGCGAGGGGGCCGCCATGTCGGCGCGTCATTCCCAGCCTGCGATGTTTCCGGGGACCGT CGGGCAGGAAGGCGCTGCGGAGGGTCATGTCTGGCTGCATGAACCCCGCGTTGTCGTAACCAACCCGATCGCCGATGACC CGGTGCGCGAGGCAGAGCGTCTTGACGAAGCGGTCGAAGAGTTGCGTGTCGGCGTTGACAAGATGATGCAGATTGCCGGT GGGCAGGACAAGGATCAGCGTCAGGTGCTCGAAGCCTACCGCATGTTTGCCAACTCCAAGGGGTGGATGCGGCGCATGCA GGAGGATATCGCAAACGGTCTGTCCGCCGAAGCCGCCGTCGAAAAGGAGCAATCGACCGCGCGTGCGCGCATGTCACAGA TCACGGACGGATACCTGCGCGAGCGCTTGAGTGACCTTGATGATCTGTCAAACCGGCTGCTGCGCATTCTGACCGGGCAG GGTGCCGACACAGGCGCCGAGATGCCGGATGATCCGATCCTGATTGCACGCAATATCGGGCCGGCTGAATTACTGGAATA CGGGCGCAAGCTGAAAGGCATCGTGCTGGAGGAGGGTTCGGTTGGCAGCCACGCCGCGGTGGTCGCGCGCGCACTGGCCA TTCCGTTGATCGTCCATGCCCAGCGGATCACGACCGAGGCGTTGAATGGCGATCATATCATGGTGGACGGAGAGCAGGGC ATCGCACACCTGCGACCGGACGAATCCGTTGTCTCTGCGTTTCGCGACAAAATCGCGATGCTGGCCGCCGCGCAGGAACG CTACGCCTCCATCCGCGAAAAACCCGCACTGACGCAGGACGGGTTCACAGTGGCGCTTAATATGAACGCCGGGCTCATGG CGGACCTGCCTTCGCTGGTCTCTTCTGGGGCGGAAGGTGTCGGTCTTTTCCGGACCGAATTGCAGTTTCTCGTGCGCAAC CAGATGCCAAGGCGCTCTGAACTGGTGGCTCTTTATGCCCGCGTGCTTGATGCGGCGCAGGGCAAGCGGGTCGTTTTTCG AACGCTCGATATCGGCTCCGACAAGGTGCTGCCCTATATGAAGCCGAACGAAGAGCCGAACCCGGCGCTTGGCTGGCGCG CCATTCGCGTCGGTCTGGACAAGCCGGGCATCATGCGCATGCAGCTTCAGGCGCTCATCCGGGCTGCAAATGGCCGCCCG CTCACCGTGATGTTTCCCTTTGTGGCGCAAATGGAAGAATATACCGAGGCGCGGCGCCTGATGGATAAAACCGTGGCCGC CGAAGCGCGACTGGGTCACATTTTGCCTGAAACGATTGAAATCGGCGCAATGCTTGAAACGCCGAGCCTCGCATTCGCCC CGAACAAATTTTTTGAAAACGTGGATTTTCTGTCGATTGGTGGCAATGACCTCAAGCAGTTTTTCTTTGCGGCGGACCGG GAAAACGAGCGGGTGCGGCGGCGCTATGACACTTTGAATGTCTCGTTTCTGAGCTTTGTGGAGCGGATTGTGGAGCGTTG CGAGGCGACCGGAACACCTGTTTCATTCTGCGGCGAAGATGCCGGACGCCCGGTTGAGGCTTTGTGCTTTGCGGCGATGG GGTTGCGCAGCCTGTCGATGCGGCCTGCCTCCATCGGCCCGGTGAAAAACCTGCTGCGCCGCAGCGATCTGGGTCAGGTC CGCAAGGTCATCGCAGACGCGCGTCACCGGGGTGAGATGTCCGTGCGACCTGCGGTCATGGAATGGCTGCGCGGGCAGGG CTGA
Upstream 100 bases:
>100_bases GGAACTTGCCGTGCAGGCCCTGCATGATGCCTTCGAATTGGAAAAGGCCGCCTGACCGTCACACGCAAAATGGCGTCGCG CATATGGGAAGGAAGCATAC
Downstream 100 bases:
>100_bases CCGGGCGGCAGTATTGCCCGCTGCATGGCGTCAACTGAGCCACTGACGAAGCTGGAAAAGGTGGTGACAGACGTGGGTTT TCTTGGCGATGGCGCGCTGC
Product: phosphoenolpyruvate-protein phosphotransferase, putative
Products: NA
Alternate protein names: Enzyme I-Ntr; Phosphotransferase system, enzyme I [H]
Number of amino acids: Translated: 747; Mature: 746
Protein sequence:
>747_residues MAERLESESRKLLGRLRDAMAGLAAGQERLDEITSLIAESMDCDVCSIYLFRDAETLELCATKGLNKEAVHKTRMKLGEG LVGRVAKQRTIVNTPDAPQAKGFRYMPETGEEVFSSFLGIPIQRLGDALGVLVVQSRAAREFSADAVYALEVVAMVLAEM TELGAFVGEGAAMSARHSQPAMFPGTVGQEGAAEGHVWLHEPRVVVTNPIADDPVREAERLDEAVEELRVGVDKMMQIAG GQDKDQRQVLEAYRMFANSKGWMRRMQEDIANGLSAEAAVEKEQSTARARMSQITDGYLRERLSDLDDLSNRLLRILTGQ GADTGAEMPDDPILIARNIGPAELLEYGRKLKGIVLEEGSVGSHAAVVARALAIPLIVHAQRITTEALNGDHIMVDGEQG IAHLRPDESVVSAFRDKIAMLAAAQERYASIREKPALTQDGFTVALNMNAGLMADLPSLVSSGAEGVGLFRTELQFLVRN QMPRRSELVALYARVLDAAQGKRVVFRTLDIGSDKVLPYMKPNEEPNPALGWRAIRVGLDKPGIMRMQLQALIRAANGRP LTVMFPFVAQMEEYTEARRLMDKTVAAEARLGHILPETIEIGAMLETPSLAFAPNKFFENVDFLSIGGNDLKQFFFAADR ENERVRRRYDTLNVSFLSFVERIVERCEATGTPVSFCGEDAGRPVEALCFAAMGLRSLSMRPASIGPVKNLLRRSDLGQV RKVIADARHRGEMSVRPAVMEWLRGQG
Sequences:
>Translated_747_residues MAERLESESRKLLGRLRDAMAGLAAGQERLDEITSLIAESMDCDVCSIYLFRDAETLELCATKGLNKEAVHKTRMKLGEG LVGRVAKQRTIVNTPDAPQAKGFRYMPETGEEVFSSFLGIPIQRLGDALGVLVVQSRAAREFSADAVYALEVVAMVLAEM TELGAFVGEGAAMSARHSQPAMFPGTVGQEGAAEGHVWLHEPRVVVTNPIADDPVREAERLDEAVEELRVGVDKMMQIAG GQDKDQRQVLEAYRMFANSKGWMRRMQEDIANGLSAEAAVEKEQSTARARMSQITDGYLRERLSDLDDLSNRLLRILTGQ GADTGAEMPDDPILIARNIGPAELLEYGRKLKGIVLEEGSVGSHAAVVARALAIPLIVHAQRITTEALNGDHIMVDGEQG IAHLRPDESVVSAFRDKIAMLAAAQERYASIREKPALTQDGFTVALNMNAGLMADLPSLVSSGAEGVGLFRTELQFLVRN QMPRRSELVALYARVLDAAQGKRVVFRTLDIGSDKVLPYMKPNEEPNPALGWRAIRVGLDKPGIMRMQLQALIRAANGRP LTVMFPFVAQMEEYTEARRLMDKTVAAEARLGHILPETIEIGAMLETPSLAFAPNKFFENVDFLSIGGNDLKQFFFAADR ENERVRRRYDTLNVSFLSFVERIVERCEATGTPVSFCGEDAGRPVEALCFAAMGLRSLSMRPASIGPVKNLLRRSDLGQV RKVIADARHRGEMSVRPAVMEWLRGQG >Mature_746_residues AERLESESRKLLGRLRDAMAGLAAGQERLDEITSLIAESMDCDVCSIYLFRDAETLELCATKGLNKEAVHKTRMKLGEGL VGRVAKQRTIVNTPDAPQAKGFRYMPETGEEVFSSFLGIPIQRLGDALGVLVVQSRAAREFSADAVYALEVVAMVLAEMT ELGAFVGEGAAMSARHSQPAMFPGTVGQEGAAEGHVWLHEPRVVVTNPIADDPVREAERLDEAVEELRVGVDKMMQIAGG QDKDQRQVLEAYRMFANSKGWMRRMQEDIANGLSAEAAVEKEQSTARARMSQITDGYLRERLSDLDDLSNRLLRILTGQG ADTGAEMPDDPILIARNIGPAELLEYGRKLKGIVLEEGSVGSHAAVVARALAIPLIVHAQRITTEALNGDHIMVDGEQGI AHLRPDESVVSAFRDKIAMLAAAQERYASIREKPALTQDGFTVALNMNAGLMADLPSLVSSGAEGVGLFRTELQFLVRNQ MPRRSELVALYARVLDAAQGKRVVFRTLDIGSDKVLPYMKPNEEPNPALGWRAIRVGLDKPGIMRMQLQALIRAANGRPL TVMFPFVAQMEEYTEARRLMDKTVAAEARLGHILPETIEIGAMLETPSLAFAPNKFFENVDFLSIGGNDLKQFFFAADRE NERVRRRYDTLNVSFLSFVERIVERCEATGTPVSFCGEDAGRPVEALCFAAMGLRSLSMRPASIGPVKNLLRRSDLGQVR KVIADARHRGEMSVRPAVMEWLRGQG
Specific function: Component of the phosphoenolpyruvate-dependent nitrogen- metabolic phosphotransferase system (nitrogen-metabolic PTS), that seems to be involved in regulating nitrogen metabolism. Enzyme I- Ntr transfers the phosphoryl group from phosphoenolpyruvate (PEP)
COG id: COG3605
COG function: function code T; Signal transduction protein containing GAF and PtsI domains
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GAF domain [H]
Homologues:
Organism=Escherichia coli, GI1789193, Length=722, Percent_Identity=33.3795013850416, Blast_Score=331, Evalue=1e-91, Organism=Escherichia coli, GI1788756, Length=445, Percent_Identity=33.7078651685393, Blast_Score=273, Evalue=3e-74, Organism=Escherichia coli, GI1788726, Length=549, Percent_Identity=30.2367941712204, Blast_Score=235, Evalue=8e-63, Organism=Escherichia coli, GI48994992, Length=486, Percent_Identity=31.0699588477366, Blast_Score=234, Evalue=2e-62,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003018 - InterPro: IPR008279 - InterPro: IPR006318 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR008731 - InterPro: IPR015813 [H]
Pfam domain/function: PF01590 GAF; PF05524 PEP-utilisers_N; PF00391 PEP-utilizers; PF02896 PEP-utilizers_C [H]
EC number: =2.7.3.9 [H]
Molecular weight: Translated: 82072; Mature: 81941
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAERLESESRKLLGRLRDAMAGLAAGQERLDEITSLIAESMDCDVCSIYLFRDAETLELC CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH ATKGLNKEAVHKTRMKLGEGLVGRVAKQRTIVNTPDAPQAKGFRYMPETGEEVFSSFLGI HHCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC PIQRLGDALGVLVVQSRAAREFSADAVYALEVVAMVLAEMTELGAFVGEGAAMSARHSQP CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC AMFPGTVGQEGAAEGHVWLHEPRVVVTNPIADDPVREAERLDEAVEELRVGVDKMMQIAG CCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC GQDKDQRQVLEAYRMFANSKGWMRRMQEDIANGLSAEAAVEKEQSTARARMSQITDGYLR CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ERLSDLDDLSNRLLRILTGQGADTGAEMPDDPILIARNIGPAELLEYGRKLKGIVLEEGS HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCEEEECCC VGSHAAVVARALAIPLIVHAQRITTEALNGDHIMVDGEQGIAHLRPDESVVSAFRDKIAM CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH LAAAQERYASIREKPALTQDGFTVALNMNAGLMADLPSLVSSGAEGVGLFRTELQFLVRN HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH QMPRRSELVALYARVLDAAQGKRVVFRTLDIGSDKVLPYMKPNEEPNPALGWRAIRVGLD CCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCC KPGIMRMQLQALIRAANGRPLTVMFPFVAQMEEYTEARRLMDKTVAAEARLGHILPETIE CCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH IGAMLETPSLAFAPNKFFENVDFLSIGGNDLKQFFFAADRENERVRRRYDTLNVSFLSFV HCEEECCCCCEECCHHHHCCCCEEECCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH ERIVERCEATGTPVSFCGEDAGRPVEALCFAAMGLRSLSMRPASIGPVKNLLRRSDLGQV HHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHH RKVIADARHRGEMSVRPAVMEWLRGQG HHHHHHHHHCCCCCCCHHHHHHHCCCC >Mature Secondary Structure AERLESESRKLLGRLRDAMAGLAAGQERLDEITSLIAESMDCDVCSIYLFRDAETLELC CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH ATKGLNKEAVHKTRMKLGEGLVGRVAKQRTIVNTPDAPQAKGFRYMPETGEEVFSSFLGI HHCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC PIQRLGDALGVLVVQSRAAREFSADAVYALEVVAMVLAEMTELGAFVGEGAAMSARHSQP CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC AMFPGTVGQEGAAEGHVWLHEPRVVVTNPIADDPVREAERLDEAVEELRVGVDKMMQIAG CCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC GQDKDQRQVLEAYRMFANSKGWMRRMQEDIANGLSAEAAVEKEQSTARARMSQITDGYLR CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ERLSDLDDLSNRLLRILTGQGADTGAEMPDDPILIARNIGPAELLEYGRKLKGIVLEEGS HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCEEEECCC VGSHAAVVARALAIPLIVHAQRITTEALNGDHIMVDGEQGIAHLRPDESVVSAFRDKIAM CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH LAAAQERYASIREKPALTQDGFTVALNMNAGLMADLPSLVSSGAEGVGLFRTELQFLVRN HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH QMPRRSELVALYARVLDAAQGKRVVFRTLDIGSDKVLPYMKPNEEPNPALGWRAIRVGLD CCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCC KPGIMRMQLQALIRAANGRPLTVMFPFVAQMEEYTEARRLMDKTVAAEARLGHILPETIE CCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH IGAMLETPSLAFAPNKFFENVDFLSIGGNDLKQFFFAADRENERVRRRYDTLNVSFLSFV HCEEECCCCCEECCHHHHCCCCEEECCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH ERIVERCEATGTPVSFCGEDAGRPVEALCFAAMGLRSLSMRPASIGPVKNLLRRSDLGQV HHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHH RKVIADARHRGEMSVRPAVMEWLRGQG HHHHHHHHHCCCCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 7896715; 8973315 [H]