| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110679363
Identifier: 110679363
GI number: 110679363
Start: 1990255
End: 1991487
Strand: Direct
Name: 110679363
Synonym: RD1_2082
Alternate gene names: NA
Gene position: 1990255-1991487 (Clockwise)
Preceding gene: 110679362
Following gene: 110679364
Centisome position: 48.15
GC content: 57.02
Gene sequence:
>1233_bases ATGGCCCGCTATGTTCCCCTTGCAGATGCACATCGCCTCCCGTTGTGGCGGCGGCCCATCGCCTTGTTGTTCCTGATGGC GCTTGCGATGCCGATTGCGTTCAATACATGGTCTGCATTGCTGAACAACTTCGTGATTGAAGCCGCCAATTTTGACGGTT CCGACATCGGTCTTTTGCACACGGTGCGCGAAATACCGGGGTTTCTGGCGGTCGGTGTCATCGCCATCATCATTTTCATG CGCGAACAGGTGCTGGGGCTGGTGTCGCTGATCCTGCTCGGCGTTGCCACTGCGGTCACGGCGTGGTTCCCGTCCATGGG CGGCATTCTGGCCATCACCATGCTGAGTTCGATCGGCTTTCACTATTACGAGACGGTCAATCAATCCCTGCAACTGCAAT GGCTGAGCAAACAGGAAGCGCCGCGTGTCCTCGGCTGGCTGCTCGCGGCCGGATCAGGGGCCACGTTGATTGCCTATCTG GCGATCATGGCGCTCTGGGACACTTTGGGGCTGTCCTACAATACGGTCTACATGGTGGGCGGTGGCATCACCGTCGTCCT GGCAGTTTTTGCGATGCTTGCCTATCCGCAGTTCGAAGCCCCCAATCCGCAGATCAAGAAAATGGTGCTGCGCAAACGCT ACTGGCTCTATTACGCGCTGCAGTTCATGTCCGGCGCACGGCGTCAGATTTTTGTGGTTTTTGCGGGTTTCATGATGGTC GAGAAATTCGGCTATGATGTGCATGAGATCACGCTGCTCTATCTTATCAACCTTGTGGTCAACATGATGGTGGCCCCTTT GCTGGGCCGTGCGGTGGGCTATTTTGGCGAACGGCGCACGCTCGGGTTTGAATACATCGGTCTGGTGCTGGTGTTCCTGT GTTATGGTGGCGTTTACTATTTCAGCTGGGGCGTGGCAGTGGCGGCGACGCTTTATGTGCTGGATCACATTTTCTTTGGG CTCGCGCTGGCGCTGAAAACCTATTTTCAGAAAATCGCCGATCCCGGTGACATCGCGCCGACCGCTGCCGTGGCCTTTAC CATCAACCATATTGCGGCGGTCTTTCTGCCCGTGTCTTTTGGTCTGCTGTGGCTATGGTCCCCGGCGGCGGTGTTCTTTC TGGCGGCGTCCATGGCGGCGGTGTCCTTTGTGCTGGCGATGATGATCCCGCGCCATCCCGAAAAAGGGTTTGAAACCATT TTCGCGCGTGGCATCCCCACACCGGCAGAATGA
Upstream 100 bases:
>100_bases TTCTACTGACCTTCACCGTCATCATGCGGGGCATCAGGGACATTGACGCGCCGCGAAATAGCACCTCGTCAAAGGCCAGC AAAAGGACTAAGCAACCGGT
Downstream 100 bases:
>100_bases GCACCGGTCGGTTCCTCACGGGATCGACCATGGGGCATGTTGTGCGCATGACGGCCACAGGGGCCTTCGGGATCACCTTC GTTTTTCTCGTGGATGCGGC
Product: MFS protein, permease component, putative
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Transporter Facilitator Family; Transporter MFS Superfamily; Permease Facilitator Superfamily; Facilitator Superfamily Permease; Permease Of Facilitator Superfamily; Facilitator Family Transporter; MFS Protein Permease Component; Multidrug-Efflux Transporter MFS Family
Number of amino acids: Translated: 410; Mature: 409
Protein sequence:
>410_residues MARYVPLADAHRLPLWRRPIALLFLMALAMPIAFNTWSALLNNFVIEAANFDGSDIGLLHTVREIPGFLAVGVIAIIIFM REQVLGLVSLILLGVATAVTAWFPSMGGILAITMLSSIGFHYYETVNQSLQLQWLSKQEAPRVLGWLLAAGSGATLIAYL AIMALWDTLGLSYNTVYMVGGGITVVLAVFAMLAYPQFEAPNPQIKKMVLRKRYWLYYALQFMSGARRQIFVVFAGFMMV EKFGYDVHEITLLYLINLVVNMMVAPLLGRAVGYFGERRTLGFEYIGLVLVFLCYGGVYYFSWGVAVAATLYVLDHIFFG LALALKTYFQKIADPGDIAPTAAVAFTINHIAAVFLPVSFGLLWLWSPAAVFFLAASMAAVSFVLAMMIPRHPEKGFETI FARGIPTPAE
Sequences:
>Translated_410_residues MARYVPLADAHRLPLWRRPIALLFLMALAMPIAFNTWSALLNNFVIEAANFDGSDIGLLHTVREIPGFLAVGVIAIIIFM REQVLGLVSLILLGVATAVTAWFPSMGGILAITMLSSIGFHYYETVNQSLQLQWLSKQEAPRVLGWLLAAGSGATLIAYL AIMALWDTLGLSYNTVYMVGGGITVVLAVFAMLAYPQFEAPNPQIKKMVLRKRYWLYYALQFMSGARRQIFVVFAGFMMV EKFGYDVHEITLLYLINLVVNMMVAPLLGRAVGYFGERRTLGFEYIGLVLVFLCYGGVYYFSWGVAVAATLYVLDHIFFG LALALKTYFQKIADPGDIAPTAAVAFTINHIAAVFLPVSFGLLWLWSPAAVFFLAASMAAVSFVLAMMIPRHPEKGFETI FARGIPTPAE >Mature_409_residues ARYVPLADAHRLPLWRRPIALLFLMALAMPIAFNTWSALLNNFVIEAANFDGSDIGLLHTVREIPGFLAVGVIAIIIFMR EQVLGLVSLILLGVATAVTAWFPSMGGILAITMLSSIGFHYYETVNQSLQLQWLSKQEAPRVLGWLLAAGSGATLIAYLA IMALWDTLGLSYNTVYMVGGGITVVLAVFAMLAYPQFEAPNPQIKKMVLRKRYWLYYALQFMSGARRQIFVVFAGFMMVE KFGYDVHEITLLYLINLVVNMMVAPLLGRAVGYFGERRTLGFEYIGLVLVFLCYGGVYYFSWGVAVAATLYVLDHIFFGL ALALKTYFQKIADPGDIAPTAAVAFTINHIAAVFLPVSFGLLWLWSPAAVFFLAASMAAVSFVLAMMIPRHPEKGFETIF ARGIPTPAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45305; Mature: 45173
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARYVPLADAHRLPLWRRPIALLFLMALAMPIAFNTWSALLNNFVIEAANFDGSDIGLLH CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHH TVREIPGFLAVGVIAIIIFMREQVLGLVSLILLGVATAVTAWFPSMGGILAITMLSSIGF HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH HYYETVNQSLQLQWLSKQEAPRVLGWLLAAGSGATLIAYLAIMALWDTLGLSYNTVYMVG HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC GGITVVLAVFAMLAYPQFEAPNPQIKKMVLRKRYWLYYALQFMSGARRQIFVVFAGFMMV CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH EKFGYDVHEITLLYLINLVVNMMVAPLLGRAVGYFGERRTLGFEYIGLVLVFLCYGGVYY HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH FSWGVAVAATLYVLDHIFFGLALALKTYFQKIADPGDIAPTAAVAFTINHIAAVFLPVSF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH GLLWLWSPAAVFFLAASMAAVSFVLAMMIPRHPEKGFETIFARGIPTPAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCC >Mature Secondary Structure ARYVPLADAHRLPLWRRPIALLFLMALAMPIAFNTWSALLNNFVIEAANFDGSDIGLLH CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHH TVREIPGFLAVGVIAIIIFMREQVLGLVSLILLGVATAVTAWFPSMGGILAITMLSSIGF HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH HYYETVNQSLQLQWLSKQEAPRVLGWLLAAGSGATLIAYLAIMALWDTLGLSYNTVYMVG HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC GGITVVLAVFAMLAYPQFEAPNPQIKKMVLRKRYWLYYALQFMSGARRQIFVVFAGFMMV CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH EKFGYDVHEITLLYLINLVVNMMVAPLLGRAVGYFGERRTLGFEYIGLVLVFLCYGGVYY HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH FSWGVAVAATLYVLDHIFFGLALALKTYFQKIADPGDIAPTAAVAFTINHIAAVFLPVSF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH GLLWLWSPAAVFFLAASMAAVSFVLAMMIPRHPEKGFETIFARGIPTPAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA