| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is ppk [H]
Identifier: 110679323
GI number: 110679323
Start: 1949833
End: 1952058
Strand: Reverse
Name: ppk [H]
Synonym: RD1_2042
Alternate gene names: 110679323
Gene position: 1952058-1949833 (Counterclockwise)
Preceding gene: 110679324
Following gene: 110679322
Centisome position: 47.23
GC content: 59.25
Gene sequence:
>2226_bases TTGCGCGATAAATGTCATTCAGCCGACACATGCTTTTTGCAAAAGGTCAAAATGACACAAGCAGATTTTCTCAGCGCAGA TTTTCCAGAACCGGTGGCGCTTCCCAATGTGGATGCAAGCGGACCGGAGCGGTTTTTCAATCGGGAACTGAGTTGGCTGG GCTTCAACTGGCGCGTACTGGAAGAAGCCGAGAACCCGCGCGTCCCCCTGCTGGAGCGCTTGCGGTTCTTATCCATCTCA GCGACCAATCTGGATGAATTCTACACCGTGCGGGTGGCAGGCCTGCGCGAATTGGCCATGGCGGGCAATACCACCCCGGC GGCCGACGGGCTGACCCCGGCCGAGCAACTGGTTCTGATCAACAATGACGCGCGCACGCTGATGGAAACGCAGCAGCGTG TTCTGGTTGCGCTGCTTGCCGATATGGAAGCCGAAAACATCTCCGTGCTCAGACGGGATGATCTGACCGCTGCAGACAAG AAGTACCTCGAAGAGGTTTTTCTGACGCAGGTTTTCGCTGTCTTGTCGCCGCTTGCGATTGATCCCGCGCACCCTTTCCC GTTCATTCCAAACACCGGATATGCCCTCGCCCTGCAGCTTGAACGCAGCCGCGACAAACGCCCCTTGCAGGCGCTCTTGC CGATCCCCGCACAGATCGAGCGTTTCGTCGCGTTGCCCGCGCCCGATGGCAGCCACCGCTTTCTTCCCCTCGAAGAACTG CTGGTCATGAACATCGCGCAATTGTTTCCCGGCTATAAGCTCAAGGCGCATTTTGAATTCCGCGTGTTGCGCGACAGTGA TCTGGAGGTCGAGGACGAGGCCGAAGACCTCGTGCGCGAATTCGAGGTGGCGCTCAAACGGCGGCGGCGCGGCGAAGTCG TGCGCCTGACCCATTCCGCCGGTGCACCGCCCAAGCTGAAATCGGTGATCATGGAAGAACTGGATGTTGATCTCGACGAG GTGATCCAGCTTGATGGCATGGTCGGCATGGCCGACCTCGCCGAATTGGTGCTGGATGCGCGCCCCGATCTTCTGTGGCC CAATTTCACCCCGCGAATCCCTGAACGGGTCACGGACCATGACGGCGACATGCTGTCCGCGATCCGCAACAAGGACATGT TGTTGCACCACCCCTACGAGACGTTTGACATGGTGGTGCGCTTTTTGCAGCAGGCCGCACGCGACCCGCAGGTTGTCGCG ATCAAACAGACGCTCTATCGCACATCACGCGACAGCCCGATTGTCGAAGCACTTTGCGAAGCGGCGGAGGGCGGCAAATC CGTCACAGCGCTGGTTGAGTTGAAAGCCCGCTTTGACGAAGCGGCCAACATCCGCCAGTCCCGCCGCCTCGAACGCGCGG GCGCCCATGTGGTTTACGGGTTTCTTGACCTGAAAACCCACGCCAAGATTTCCACCATCGTGCGGCGCGAGGGCAATCAA CTCGTGACCTATACCCACTATGGGACCGGCAATTACCACCCCATCACGGCGCGGATTTACACGGACCTTTCGTTTTTCAC CTGCGATGCGCGCCTCGGGCGTGATGCCACCAAGGTTTTCAACTACCTGTCGGGCTATGCACAGCCCGATAGCCTCGACA ATCTTGCGATTTCGCCGATCACGCTGAAACCACGGCTGCTGGAACTGATCGCCGCCGAAGCGGATCACGCCCACAATGGC CGCCCGGCCGTGATCTGGGCCAAGATGAATTCCCTGATCGACAGCGAAGTCATCGACGCCCTATATGCGGCCAGCGCTGC CGGGGTCAAAATCAGTCTGGTGATCCGGGGCATCTGCGGTCTGCGCCCCGGGGTGAAAGGTCTGAGCGAAAACATACGTG TCAAATCCATCGTGGGGCGGTTTCTGGAACACTCCCGCATCGTCTGTTTTGGCAACGGCGCGGGCCTGCCCCACAAGAAA GCGCGCGTTTTCATCTCATCAGCGGATTGGATGGGTCGCAACCTCAACCGGCGCGTCGAAACGCTGGTCGAGATCGAAAA CCCGACGGTCAAAGCGCAGATCGTCAGCCAGATCATGGCTGCAAATCTGGCGGATGTCGCCCAAAGCTGGGTGATGCGCC CCGATGGTGTTTTCGAACGCCCCCCCGTCCAAGAAGGCAAGTTTGCCTTTAACTGCCATCGGTTCTTCATGGAAAACCCG TCGCTTTCCGGCCGTGGGTCCGCCGGTGCCTCGGATGTTCCCAAACTGACGCACACCGAAGACTGA
Upstream 100 bases:
>100_bases GCGCGCAGGATCGTTGCGGCCCTTGATGCGGCATCGCTGGCGCAAAAGCGCCCGCTCTCACGGCAACTTGCGGCGGCAGT GCTGGACAAAGAGGATCAGC
Downstream 100 bases:
>100_bases CGCCCACACACAACAAAACGCAAAAGCCGCAAAAATAACCCCGTGATCCGCATTGACGGCTGCGGTGTTTTTGAACAGGC TGCGCGCGAACAGCCGGTGT
Product: polyphosphate kinase
Products: NA
Alternate protein names: ATP-polyphosphate phosphotransferase; Polyphosphoric acid kinase [H]
Number of amino acids: Translated: 741; Mature: 741
Protein sequence:
>741_residues MRDKCHSADTCFLQKVKMTQADFLSADFPEPVALPNVDASGPERFFNRELSWLGFNWRVLEEAENPRVPLLERLRFLSIS ATNLDEFYTVRVAGLRELAMAGNTTPAADGLTPAEQLVLINNDARTLMETQQRVLVALLADMEAENISVLRRDDLTAADK KYLEEVFLTQVFAVLSPLAIDPAHPFPFIPNTGYALALQLERSRDKRPLQALLPIPAQIERFVALPAPDGSHRFLPLEEL LVMNIAQLFPGYKLKAHFEFRVLRDSDLEVEDEAEDLVREFEVALKRRRRGEVVRLTHSAGAPPKLKSVIMEELDVDLDE VIQLDGMVGMADLAELVLDARPDLLWPNFTPRIPERVTDHDGDMLSAIRNKDMLLHHPYETFDMVVRFLQQAARDPQVVA IKQTLYRTSRDSPIVEALCEAAEGGKSVTALVELKARFDEAANIRQSRRLERAGAHVVYGFLDLKTHAKISTIVRREGNQ LVTYTHYGTGNYHPITARIYTDLSFFTCDARLGRDATKVFNYLSGYAQPDSLDNLAISPITLKPRLLELIAAEADHAHNG RPAVIWAKMNSLIDSEVIDALYAASAAGVKISLVIRGICGLRPGVKGLSENIRVKSIVGRFLEHSRIVCFGNGAGLPHKK ARVFISSADWMGRNLNRRVETLVEIENPTVKAQIVSQIMAANLADVAQSWVMRPDGVFERPPVQEGKFAFNCHRFFMENP SLSGRGSAGASDVPKLTHTED
Sequences:
>Translated_741_residues MRDKCHSADTCFLQKVKMTQADFLSADFPEPVALPNVDASGPERFFNRELSWLGFNWRVLEEAENPRVPLLERLRFLSIS ATNLDEFYTVRVAGLRELAMAGNTTPAADGLTPAEQLVLINNDARTLMETQQRVLVALLADMEAENISVLRRDDLTAADK KYLEEVFLTQVFAVLSPLAIDPAHPFPFIPNTGYALALQLERSRDKRPLQALLPIPAQIERFVALPAPDGSHRFLPLEEL LVMNIAQLFPGYKLKAHFEFRVLRDSDLEVEDEAEDLVREFEVALKRRRRGEVVRLTHSAGAPPKLKSVIMEELDVDLDE VIQLDGMVGMADLAELVLDARPDLLWPNFTPRIPERVTDHDGDMLSAIRNKDMLLHHPYETFDMVVRFLQQAARDPQVVA IKQTLYRTSRDSPIVEALCEAAEGGKSVTALVELKARFDEAANIRQSRRLERAGAHVVYGFLDLKTHAKISTIVRREGNQ LVTYTHYGTGNYHPITARIYTDLSFFTCDARLGRDATKVFNYLSGYAQPDSLDNLAISPITLKPRLLELIAAEADHAHNG RPAVIWAKMNSLIDSEVIDALYAASAAGVKISLVIRGICGLRPGVKGLSENIRVKSIVGRFLEHSRIVCFGNGAGLPHKK ARVFISSADWMGRNLNRRVETLVEIENPTVKAQIVSQIMAANLADVAQSWVMRPDGVFERPPVQEGKFAFNCHRFFMENP SLSGRGSAGASDVPKLTHTED >Mature_741_residues MRDKCHSADTCFLQKVKMTQADFLSADFPEPVALPNVDASGPERFFNRELSWLGFNWRVLEEAENPRVPLLERLRFLSIS ATNLDEFYTVRVAGLRELAMAGNTTPAADGLTPAEQLVLINNDARTLMETQQRVLVALLADMEAENISVLRRDDLTAADK KYLEEVFLTQVFAVLSPLAIDPAHPFPFIPNTGYALALQLERSRDKRPLQALLPIPAQIERFVALPAPDGSHRFLPLEEL LVMNIAQLFPGYKLKAHFEFRVLRDSDLEVEDEAEDLVREFEVALKRRRRGEVVRLTHSAGAPPKLKSVIMEELDVDLDE VIQLDGMVGMADLAELVLDARPDLLWPNFTPRIPERVTDHDGDMLSAIRNKDMLLHHPYETFDMVVRFLQQAARDPQVVA IKQTLYRTSRDSPIVEALCEAAEGGKSVTALVELKARFDEAANIRQSRRLERAGAHVVYGFLDLKTHAKISTIVRREGNQ LVTYTHYGTGNYHPITARIYTDLSFFTCDARLGRDATKVFNYLSGYAQPDSLDNLAISPITLKPRLLELIAAEADHAHNG RPAVIWAKMNSLIDSEVIDALYAASAAGVKISLVIRGICGLRPGVKGLSENIRVKSIVGRFLEHSRIVCFGNGAGLPHKK ARVFISSADWMGRNLNRRVETLVEIENPTVKAQIVSQIMAANLADVAQSWVMRPDGVFERPPVQEGKFAFNCHRFFMENP SLSGRGSAGASDVPKLTHTED
Specific function: Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) [H]
COG id: COG0855
COG function: function code P; Polyphosphate kinase
Gene ontology:
Cell location: Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polyphosphate kinase family [H]
Homologues:
Organism=Escherichia coli, GI1788847, Length=668, Percent_Identity=35.0299401197605, Blast_Score=370, Evalue=1e-103,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003414 [H]
Pfam domain/function: PF02503 PP_kinase [H]
EC number: =2.7.4.1 [H]
Molecular weight: Translated: 82780; Mature: 82780
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDKCHSADTCFLQKVKMTQADFLSADFPEPVALPNVDASGPERFFNRELSWLGFNWRVL CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCHHHCCCCEEEE EEAENPRVPLLERLRFLSISATNLDEFYTVRVAGLRELAMAGNTTPAADGLTPAEQLVLI CCCCCCCCCHHHHHHHHEEECCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEE NNDARTLMETQQRVLVALLADMEAENISVLRRDDLTAADKKYLEEVFLTQVFAVLSPLAI CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC DPAHPFPFIPNTGYALALQLERSRDKRPLQALLPIPAQIERFVALPAPDGSHRFLPLEEL CCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHCCCCHHHHHEEEECCCCCCCCCCCHHHH LVMNIAQLFPGYKLKAHFEFRVLRDSDLEVEDEAEDLVREFEVALKRRRRGEVVRLTHSA HHHHHHHHCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC GAPPKLKSVIMEELDVDLDEVIQLDGMVGMADLAELVLDARPDLLWPNFTPRIPERVTDH CCCHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCC DGDMLSAIRNKDMLLHHPYETFDMVVRFLQQAARDPQVVAIKQTLYRTSRDSPIVEALCE CCHHHHHHCCCCCEEECCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHCCCCCHHHHHHHH AAEGGKSVTALVELKARFDEAANIRQSRRLERAGAHVVYGFLDLKTHAKISTIVRREGNQ HHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHCCCCE LVTYTHYGTGNYHPITARIYTDLSFFTCDARLGRDATKVFNYLSGYAQPDSLDNLAISPI EEEEEEECCCCCCEEEEEEEECCEEEEECCHHCCHHHHHHHHHHCCCCCCCCCCCEECCE TLKPRLLELIAAEADHAHNGRPAVIWAKMNSLIDSEVIDALYAASAAGVKISLVIRGICG ECCHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHC LRPGVKGLSENIRVKSIVGRFLEHSRIVCFGNGAGLPHKKARVFISSADWMGRNLNRRVE CCCCCHHHHHCCHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHH TLVEIENPTVKAQIVSQIMAANLADVAQSWVMRPDGVFERPPVQEGKFAFNCHRFFMENP HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHEEECCC SLSGRGSAGASDVPKLTHTED CCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRDKCHSADTCFLQKVKMTQADFLSADFPEPVALPNVDASGPERFFNRELSWLGFNWRVL CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCHHHCCCCEEEE EEAENPRVPLLERLRFLSISATNLDEFYTVRVAGLRELAMAGNTTPAADGLTPAEQLVLI CCCCCCCCCHHHHHHHHEEECCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEE NNDARTLMETQQRVLVALLADMEAENISVLRRDDLTAADKKYLEEVFLTQVFAVLSPLAI CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC DPAHPFPFIPNTGYALALQLERSRDKRPLQALLPIPAQIERFVALPAPDGSHRFLPLEEL CCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHCCCCHHHHHEEEECCCCCCCCCCCHHHH LVMNIAQLFPGYKLKAHFEFRVLRDSDLEVEDEAEDLVREFEVALKRRRRGEVVRLTHSA HHHHHHHHCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC GAPPKLKSVIMEELDVDLDEVIQLDGMVGMADLAELVLDARPDLLWPNFTPRIPERVTDH CCCHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCC DGDMLSAIRNKDMLLHHPYETFDMVVRFLQQAARDPQVVAIKQTLYRTSRDSPIVEALCE CCHHHHHHCCCCCEEECCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHCCCCCHHHHHHHH AAEGGKSVTALVELKARFDEAANIRQSRRLERAGAHVVYGFLDLKTHAKISTIVRREGNQ HHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHCCCCE LVTYTHYGTGNYHPITARIYTDLSFFTCDARLGRDATKVFNYLSGYAQPDSLDNLAISPI EEEEEEECCCCCCEEEEEEEECCEEEEECCHHCCHHHHHHHHHHCCCCCCCCCCCEECCE TLKPRLLELIAAEADHAHNGRPAVIWAKMNSLIDSEVIDALYAASAAGVKISLVIRGICG ECCHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHC LRPGVKGLSENIRVKSIVGRFLEHSRIVCFGNGAGLPHKKARVFISSADWMGRNLNRRVE CCCCCHHHHHCCHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHH TLVEIENPTVKAQIVSQIMAANLADVAQSWVMRPDGVFERPPVQEGKFAFNCHRFFMENP HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHEEECCC SLSGRGSAGASDVPKLTHTED CCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA