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The map label for this gene is 110679308

Identifier: 110679308

GI number: 110679308

Start: 1933779

End: 1935206

Strand: Reverse

Name: 110679308

Synonym: RD1_2026

Alternate gene names: NA

Gene position: 1935206-1933779 (Counterclockwise)

Preceding gene: 110679309

Following gene: 110679301

Centisome position: 46.82

GC content: 61.62

Gene sequence:

>1428_bases
TTGCAAAATCTGCGGAAAGGCACCCGAATGGCCACACAAAAACTATACGCGGGGGCCAAGCTGCGAGAGCTGCGCACCCG
TATCGGCCATACGCAAAAGGACTTTGCCGCAAAGCTGGGCGTGTCTCTGCCCTATCTCAACCAGATGGAAAACAACAACC
GGCCGGTGTCGACAACGGTTGTGCTGGCCTTGGCGCAGGAGTTCGGTCTGGATGTCACGGAACTCAGCGAGGGCGACAGC
GAGCGGCTGGTCAGCGACATGCGCGAAGCATTGGCCGACCCGGTTTTTGCAGAAACCCTGCCGCCCCTCGCGGATTTGCG
GCTCGCCGCGTCAAATGCGCCGACCTTTGCACATGCTTTCCTGAAACTGCACCGCAGCTACCGACAGATGCAGGAACGGC
TGGCCTCACTGGATGAGGCATTGGGGCGCGAAGATGCGCGCGCCACTCCCAGTCCATGGGAAGAGGTGCGCGATTTCTTT
CACTATTGCGACAATTACATCGACGCCGTGGATCGCGCCGCTGAGCGTTTTGCGACGCGGGAAGGGACCTATCGAAACAT
CCGCGTGGCCGCTGTCTCCACCCTCGGCAACAGCGATGTAACCGTCGCTTTTGAGGAAACGGACCGGCTCCGGCAGTATG
ACGCGGAAACCAAGAAGCTGACCCTGTCGCGCCGGGCCCCTGCAGAAAGCCAGACCTTTCAGTTGCTGCTGCAGGTGGCT
CTGGTCAAACAGGACGCCCTGCTTGAGGCGACGCTCGACCTTGCCCGGTTCCACACCGCCGAGGCGCGCGCCATCGCCAA
GATCGGACTTGCCAATTATTTCGCGGGTGCAGCGCTGATGCCCTACACGAAGTTCCAAGAGGTCGCCGCAGAGTGTCGGC
ATGACCTCGAAGTTCTGGCAGGGCATTTCGGCGCCTCGATCGAGCAGGTGTCGCATCGCCTCTCCACGCTGCAACGCCCC
GGGGCCAAAGGTATCCCGTTCTTTTTCGTGCGGGTCGATCAGGCGGGCACGATCACGAAACGCCACTCCGCCACTCGCCT
GCAATTCGCGCGGTTTGGGGGGGCCTGCCCTTTGTGGAATGTGCACCGTGCCTTTGAATTGCCCGGCCGCTTTCTGCGCC
AACTGGCGGAAACACCAGATGGGGTACGCTACATCAGCCTGGCGCGTGATGTGACGAAACCCGGCGGGCGGTTCGGCGCG
CCCGTGCGGCGCTATGCCATCGCGCTGGGGTGCGAGGTCCGTCATGCGCGCGATCTGGTCTACGCTGATGGTATGGATCT
GACGACGGATCACGCCTTTGAACCGATTGGTATTTCCTGCCGGATTTGCGAGCGCAGCACCTGTCATCAACGCGCCGTGC
CACCGCTGGAACGCCAGCTCAAGGTCGATCCGAACCTGCGGGATGTTCTGCCTTACAGCATCGGATAG

Upstream 100 bases:

>100_bases
GAACAGCCCGTTTTAAGCCACCGGTTAGGCAAGTCTTAACCATGATGACGCACCTTGCTTCGGCGGGTTTGCAAAGTTAG
CCTTTGCCGACTCGACCCAT

Downstream 100 bases:

>100_bases
GCTTACCGGCGGGCGGCACGCCAGCCCGCCGCGCGCGCCTCGGCCACAGAACAGAACCACCGCTCGCCCTGTTTGGTACG
AATACGGGTGCGGTCATAAT

Product: DNA-binding protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MQNLRKGTRMATQKLYAGAKLRELRTRIGHTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELSEGDS
ERLVSDMREALADPVFAETLPPLADLRLAASNAPTFAHAFLKLHRSYRQMQERLASLDEALGREDARATPSPWEEVRDFF
HYCDNYIDAVDRAAERFATREGTYRNIRVAAVSTLGNSDVTVAFEETDRLRQYDAETKKLTLSRRAPAESQTFQLLLQVA
LVKQDALLEATLDLARFHTAEARAIAKIGLANYFAGAALMPYTKFQEVAAECRHDLEVLAGHFGASIEQVSHRLSTLQRP
GAKGIPFFFVRVDQAGTITKRHSATRLQFARFGGACPLWNVHRAFELPGRFLRQLAETPDGVRYISLARDVTKPGGRFGA
PVRRYAIALGCEVRHARDLVYADGMDLTTDHAFEPIGISCRICERSTCHQRAVPPLERQLKVDPNLRDVLPYSIG

Sequences:

>Translated_475_residues
MQNLRKGTRMATQKLYAGAKLRELRTRIGHTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELSEGDS
ERLVSDMREALADPVFAETLPPLADLRLAASNAPTFAHAFLKLHRSYRQMQERLASLDEALGREDARATPSPWEEVRDFF
HYCDNYIDAVDRAAERFATREGTYRNIRVAAVSTLGNSDVTVAFEETDRLRQYDAETKKLTLSRRAPAESQTFQLLLQVA
LVKQDALLEATLDLARFHTAEARAIAKIGLANYFAGAALMPYTKFQEVAAECRHDLEVLAGHFGASIEQVSHRLSTLQRP
GAKGIPFFFVRVDQAGTITKRHSATRLQFARFGGACPLWNVHRAFELPGRFLRQLAETPDGVRYISLARDVTKPGGRFGA
PVRRYAIALGCEVRHARDLVYADGMDLTTDHAFEPIGISCRICERSTCHQRAVPPLERQLKVDPNLRDVLPYSIG
>Mature_475_residues
MQNLRKGTRMATQKLYAGAKLRELRTRIGHTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELSEGDS
ERLVSDMREALADPVFAETLPPLADLRLAASNAPTFAHAFLKLHRSYRQMQERLASLDEALGREDARATPSPWEEVRDFF
HYCDNYIDAVDRAAERFATREGTYRNIRVAAVSTLGNSDVTVAFEETDRLRQYDAETKKLTLSRRAPAESQTFQLLLQVA
LVKQDALLEATLDLARFHTAEARAIAKIGLANYFAGAALMPYTKFQEVAAECRHDLEVLAGHFGASIEQVSHRLSTLQRP
GAKGIPFFFVRVDQAGTITKRHSATRLQFARFGGACPLWNVHRAFELPGRFLRQLAETPDGVRYISLARDVTKPGGRFGA
PVRRYAIALGCEVRHARDLVYADGMDLTTDHAFEPIGISCRICERSTCHQRAVPPLERQLKVDPNLRDVLPYSIG

Specific function: Unknown

COG id: COG3800

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018653
- InterPro:   IPR010359
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF09856 DUF2083; PF06114 DUF955; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 53113; Mature: 53113

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNLRKGTRMATQKLYAGAKLRELRTRIGHTQKDFAAKLGVSLPYLNQMENNNRPVSTTV
CCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHCCCCCCHHHHH
VLALAQEFGLDVTELSEGDSERLVSDMREALADPVFAETLPPLADLRLAASNAPTFAHAF
HHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHCCCCCHHHHHH
LKLHRSYRQMQERLASLDEALGREDARATPSPWEEVRDFFHYCDNYIDAVDRAAERFATR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EGTYRNIRVAAVSTLGNSDVTVAFEETDRLRQYDAETKKLTLSRRAPAESQTFQLLLQVA
CCCCCEEEEEEEEECCCCCEEEEECCHHHHHHHCCHHHHEEECCCCCCCHHHHHHHHHHH
LVKQDALLEATLDLARFHTAEARAIAKIGLANYFAGAALMPYTKFQEVAAECRHDLEVLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHH
GHFGASIEQVSHRLSTLQRPGAKGIPFFFVRVDQAGTITKRHSATRLQFARFGGACPLWN
HHHCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHCCCCCCCHH
VHRAFELPGRFLRQLAETPDGVRYISLARDVTKPGGRFGAPVRRYAIALGCEVRHARDLV
HHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
YADGMDLTTDHAFEPIGISCRICERSTCHQRAVPPLERQLKVDPNLRDVLPYSIG
EECCCCCCCCCCCCCCCCEEEECCCCCHHHHCCCCHHHHCCCCCCHHHCCCCCCC
>Mature Secondary Structure
MQNLRKGTRMATQKLYAGAKLRELRTRIGHTQKDFAAKLGVSLPYLNQMENNNRPVSTTV
CCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHCCCCCCHHHHH
VLALAQEFGLDVTELSEGDSERLVSDMREALADPVFAETLPPLADLRLAASNAPTFAHAF
HHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHCCCCCHHHHHH
LKLHRSYRQMQERLASLDEALGREDARATPSPWEEVRDFFHYCDNYIDAVDRAAERFATR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EGTYRNIRVAAVSTLGNSDVTVAFEETDRLRQYDAETKKLTLSRRAPAESQTFQLLLQVA
CCCCCEEEEEEEEECCCCCEEEEECCHHHHHHHCCHHHHEEECCCCCCCHHHHHHHHHHH
LVKQDALLEATLDLARFHTAEARAIAKIGLANYFAGAALMPYTKFQEVAAECRHDLEVLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHH
GHFGASIEQVSHRLSTLQRPGAKGIPFFFVRVDQAGTITKRHSATRLQFARFGGACPLWN
HHHCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHCCCCCCCHH
VHRAFELPGRFLRQLAETPDGVRYISLARDVTKPGGRFGAPVRRYAIALGCEVRHARDLV
HHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
YADGMDLTTDHAFEPIGISCRICERSTCHQRAVPPLERQLKVDPNLRDVLPYSIG
EECCCCCCCCCCCCCCCCEEEECCCCCHHHHCCCCHHHHCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]