Click here to switch to the map view.

The map label for this gene is betI [H]

Identifier: 110679303

GI number: 110679303

Start: 1927554

End: 1928129

Strand: Direct

Name: betI [H]

Synonym: RD1_2021

Alternate gene names: 110679303

Gene position: 1927554-1928129 (Clockwise)

Preceding gene: 110679302

Following gene: 110679304

Centisome position: 46.64

GC content: 62.67

Gene sequence:

>576_bases
ATGCCAAAAGTTGGAATGGAACCGATCCGTCGGACGGCCCTGGTCAATGCCACCATCGCTGAAATCGGCGCGCGCGGCTC
GCTGGATGTCACCGTCGGTCAGATTGCGAAACGCGCTGGCATGTCCACCGCGCTGGCGCATCATTACTTTGGCGGCAAGG
ACCAGATATTTCTGGCGGCGATGCAACAGATCCTGCGCGATTTCGGTGCGGAAGTGCGCCGCGGTCTGCGCGCCGCCCCG
ACGCCGCGCGCGCGTGTGGAGGCGTTGATTGATGCCAGTTTTGCGCCGTCGTGTTTTACGCCCTCGACCATCAGCGCGTG
GATGACGCTTTACGCATCGGCTGCGACCAATCCCGATACGCTGCGGCTGTTGCGGGTCTATCAACAGCGGCTGCACTCAA
ACCTCATCCACGCCTTGCGCCCGATTTCGTCCGATCCGGTTGCGCATGCAGAGGTGATCGCGGCACTCATAGATGGCCTT
TATCTGCGCGCCGCCCTGTCGCGTTCAAAAAGTGCCGACGCCGCACGCGATACCGCCCTTGCCGCGTTGTCGACCTTGCT
GGAGCGCCCCGCATGA

Upstream 100 bases:

>100_bases
CGACGCTGAACGAGACCAAAGGTTAGCGTCGTTTTTATTGATTGACGGATCAATCAAAATCCTTTTAGGGATGGCTTGCG
TGCTCAGACCCGGAGGGAAA

Downstream 100 bases:

>100_bases
GCAAGCCGAACATCCTGATCCTGATGGTCGACCAGTTGAACGGCACCCTTTTTCCCGATGGCCCAGCCGAGTGGCTGCAT
GCGCCAAACCTGAAAAAGCT

Product: transcriptional regulator BetI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MPKVGMEPIRRTALVNATIAEIGARGSLDVTVGQIAKRAGMSTALAHHYFGGKDQIFLAAMQQILRDFGAEVRRGLRAAP
TPRARVEALIDASFAPSCFTPSTISAWMTLYASAATNPDTLRLLRVYQQRLHSNLIHALRPISSDPVAHAEVIAALIDGL
YLRAALSRSKSADAARDTALAALSTLLERPA

Sequences:

>Translated_191_residues
MPKVGMEPIRRTALVNATIAEIGARGSLDVTVGQIAKRAGMSTALAHHYFGGKDQIFLAAMQQILRDFGAEVRRGLRAAP
TPRARVEALIDASFAPSCFTPSTISAWMTLYASAATNPDTLRLLRVYQQRLHSNLIHALRPISSDPVAHAEVIAALIDGL
YLRAALSRSKSADAARDTALAALSTLLERPA
>Mature_190_residues
PKVGMEPIRRTALVNATIAEIGARGSLDVTVGQIAKRAGMSTALAHHYFGGKDQIFLAAMQQILRDFGAEVRRGLRAAPT
PRARVEALIDASFAPSCFTPSTISAWMTLYASAATNPDTLRLLRVYQQRLHSNLIHALRPISSDPVAHAEVIAALIDGLY
LRAALSRSKSADAARDTALAALSTLLERPA

Specific function: Repressor involved in choline regulation of the bet genes [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786505, Length=186, Percent_Identity=38.1720430107527, Blast_Score=109, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR017757
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20485; Mature: 20354

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKVGMEPIRRTALVNATIAEIGARGSLDVTVGQIAKRAGMSTALAHHYFGGKDQIFLAA
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHH
MQQILRDFGAEVRRGLRAAPTPRARVEALIDASFAPSCFTPSTISAWMTLYASAATNPDT
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
LRLLRVYQQRLHSNLIHALRPISSDPVAHAEVIAALIDGLYLRAALSRSKSADAARDTAL
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
AALSTLLERPA
HHHHHHHHCCC
>Mature Secondary Structure 
PKVGMEPIRRTALVNATIAEIGARGSLDVTVGQIAKRAGMSTALAHHYFGGKDQIFLAA
CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHH
MQQILRDFGAEVRRGLRAAPTPRARVEALIDASFAPSCFTPSTISAWMTLYASAATNPDT
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
LRLLRVYQQRLHSNLIHALRPISSDPVAHAEVIAALIDGLYLRAALSRSKSADAARDTAL
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
AALSTLLERPA
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA