| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is sam [H]
Identifier: 110679302
GI number: 110679302
Start: 1926574
End: 1927479
Strand: Direct
Name: sam [H]
Synonym: RD1_2020
Alternate gene names: 110679302
Gene position: 1926574-1927479 (Clockwise)
Preceding gene: 110679300
Following gene: 110679303
Centisome position: 46.61
GC content: 59.16
Gene sequence:
>906_bases ATGTCCATGACCAAGACCTCTCAGCCCCTGACCGGCATTTTCTGGATGCTGGTGACAGGTATTTGCTTTATCTCCGTTAC GGCGTTGGTGAAATTCATGGGCACCGGGCTGCCGCCGGCGCAGATGGCTTTCCTGCGGTATCTGCTCGGGCTCGTTTTTC TGATCCCGGCCATCGGGGCCTTGCGGGCCGCGCATCTGACCCCGCGCCAATGGAAGCTCTTCGGGTTTCGCGGTGTGATC CACGGGCTGGGCGTGATTTCATGGTTCTACGCCATGACGCGCATTCCGCTCGCGGATGTCACGGCGATGAATTACCTCGC CCCGATCTATGTGACGATCGGGGCCGCCGTGTTCCTTGGGGAGAAGCTGGCCTTTCGGCGCATTGCCGCTGTCGTGATGG CGCTGATCGGGGCGTTCATTATCCTGCGACCCGGGTTTCGTGACATCAGCAGCGGGCACTTTGCCATGCTGTTTACGGCC CTCGCCTTTGGTGCGTCTTACCTGACGGCAAAGGTCACGGCGGATGAGGTCAAACCGTCCGTTGTCGTGGCCATGTTGTC GATTTTCGTCACCATCGTGCTGGCCCCTTTCGCGCTGATCAACTGGGTGACACCGACCCTTTGGGAGCTGTTTTTGCTCT TTTGCATAGCCTGCTGTGCGGTCGCCGGACACTACACCATGACGCTCGCCTTTGCCGCAGCACCAGTCACCGTTACGCAG CCTGTCACCTTTACGCAGCTGATCTGGGCGGTGCTCTTGGGATATTTCGCCTTTGGGGAGGCGGTGGACATCTGGGTGGT GATCGGTGGTGTTGTGATCCTGTCATCCGTTACATTCATCACCTGGCGCGAAGCGGTGCTCAAGCGCAAACCAACGACAC CGACGCTGAACGAGACCAAAGGTTAG
Upstream 100 bases:
>100_bases TATGTGATGAGAGTTTTATGGATAAACTATCCGTGAACGGCACAGCAGCGCCCTTCGGTATGCCCCTTGCACTATTTCAC CAAGAAGGTGTCTATGGCGC
Downstream 100 bases:
>100_bases CGTCGTTTTTATTGATTGACGGATCAATCAAAATCCTTTTAGGGATGGCTTGCGTGCTCAGACCCGGAGGGAAAATGCCA AAAGTTGGAATGGAACCGAT
Product: integral membrane protein, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 301; Mature: 300
Protein sequence:
>301_residues MSMTKTSQPLTGIFWMLVTGICFISVTALVKFMGTGLPPAQMAFLRYLLGLVFLIPAIGALRAAHLTPRQWKLFGFRGVI HGLGVISWFYAMTRIPLADVTAMNYLAPIYVTIGAAVFLGEKLAFRRIAAVVMALIGAFIILRPGFRDISSGHFAMLFTA LAFGASYLTAKVTADEVKPSVVVAMLSIFVTIVLAPFALINWVTPTLWELFLLFCIACCAVAGHYTMTLAFAAAPVTVTQ PVTFTQLIWAVLLGYFAFGEAVDIWVVIGGVVILSSVTFITWREAVLKRKPTTPTLNETKG
Sequences:
>Translated_301_residues MSMTKTSQPLTGIFWMLVTGICFISVTALVKFMGTGLPPAQMAFLRYLLGLVFLIPAIGALRAAHLTPRQWKLFGFRGVI HGLGVISWFYAMTRIPLADVTAMNYLAPIYVTIGAAVFLGEKLAFRRIAAVVMALIGAFIILRPGFRDISSGHFAMLFTA LAFGASYLTAKVTADEVKPSVVVAMLSIFVTIVLAPFALINWVTPTLWELFLLFCIACCAVAGHYTMTLAFAAAPVTVTQ PVTFTQLIWAVLLGYFAFGEAVDIWVVIGGVVILSSVTFITWREAVLKRKPTTPTLNETKG >Mature_300_residues SMTKTSQPLTGIFWMLVTGICFISVTALVKFMGTGLPPAQMAFLRYLLGLVFLIPAIGALRAAHLTPRQWKLFGFRGVIH GLGVISWFYAMTRIPLADVTAMNYLAPIYVTIGAAVFLGEKLAFRRIAAVVMALIGAFIILRPGFRDISSGHFAMLFTAL AFGASYLTAKVTADEVKPSVVVAMLSIFVTIVLAPFALINWVTPTLWELFLLFCIACCAVAGHYTMTLAFAAAPVTVTQP VTFTQLIWAVLLGYFAFGEAVDIWVVIGGVVILSSVTFITWREAVLKRKPTTPTLNETKG
Specific function: Transports S-adenosylmethionine [H]
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 32741; Mature: 32610
Theoretical pI: Translated: 10.11; Mature: 10.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMTKTSQPLTGIFWMLVTGICFISVTALVKFMGTGLPPAQMAFLRYLLGLVFLIPAIGA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH LRAAHLTPRQWKLFGFRGVIHGLGVISWFYAMTRIPLADVTAMNYLAPIYVTIGAAVFLG HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH EKLAFRRIAAVVMALIGAFIILRPGFRDISSGHFAMLFTALAFGASYLTAKVTADEVKPS HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHH VVVAMLSIFVTIVLAPFALINWVTPTLWELFLLFCIACCAVAGHYTMTLAFAAAPVTVTQ HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC PVTFTQLIWAVLLGYFAFGEAVDIWVVIGGVVILSSVTFITWREAVLKRKPTTPTLNETK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC G C >Mature Secondary Structure SMTKTSQPLTGIFWMLVTGICFISVTALVKFMGTGLPPAQMAFLRYLLGLVFLIPAIGA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH LRAAHLTPRQWKLFGFRGVIHGLGVISWFYAMTRIPLADVTAMNYLAPIYVTIGAAVFLG HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH EKLAFRRIAAVVMALIGAFIILRPGFRDISSGHFAMLFTALAFGASYLTAKVTADEVKPS HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHH VVVAMLSIFVTIVLAPFALINWVTPTLWELFLLFCIACCAVAGHYTMTLAFAAAPVTVTQ HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC PVTFTQLIWAVLLGYFAFGEAVDIWVVIGGVVILSSVTFITWREAVLKRKPTTPTLNETK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC G C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA