Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

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The map label for this gene is sam [H]

Identifier: 110679302

GI number: 110679302

Start: 1926574

End: 1927479

Strand: Direct

Name: sam [H]

Synonym: RD1_2020

Alternate gene names: 110679302

Gene position: 1926574-1927479 (Clockwise)

Preceding gene: 110679300

Following gene: 110679303

Centisome position: 46.61

GC content: 59.16

Gene sequence:

>906_bases
ATGTCCATGACCAAGACCTCTCAGCCCCTGACCGGCATTTTCTGGATGCTGGTGACAGGTATTTGCTTTATCTCCGTTAC
GGCGTTGGTGAAATTCATGGGCACCGGGCTGCCGCCGGCGCAGATGGCTTTCCTGCGGTATCTGCTCGGGCTCGTTTTTC
TGATCCCGGCCATCGGGGCCTTGCGGGCCGCGCATCTGACCCCGCGCCAATGGAAGCTCTTCGGGTTTCGCGGTGTGATC
CACGGGCTGGGCGTGATTTCATGGTTCTACGCCATGACGCGCATTCCGCTCGCGGATGTCACGGCGATGAATTACCTCGC
CCCGATCTATGTGACGATCGGGGCCGCCGTGTTCCTTGGGGAGAAGCTGGCCTTTCGGCGCATTGCCGCTGTCGTGATGG
CGCTGATCGGGGCGTTCATTATCCTGCGACCCGGGTTTCGTGACATCAGCAGCGGGCACTTTGCCATGCTGTTTACGGCC
CTCGCCTTTGGTGCGTCTTACCTGACGGCAAAGGTCACGGCGGATGAGGTCAAACCGTCCGTTGTCGTGGCCATGTTGTC
GATTTTCGTCACCATCGTGCTGGCCCCTTTCGCGCTGATCAACTGGGTGACACCGACCCTTTGGGAGCTGTTTTTGCTCT
TTTGCATAGCCTGCTGTGCGGTCGCCGGACACTACACCATGACGCTCGCCTTTGCCGCAGCACCAGTCACCGTTACGCAG
CCTGTCACCTTTACGCAGCTGATCTGGGCGGTGCTCTTGGGATATTTCGCCTTTGGGGAGGCGGTGGACATCTGGGTGGT
GATCGGTGGTGTTGTGATCCTGTCATCCGTTACATTCATCACCTGGCGCGAAGCGGTGCTCAAGCGCAAACCAACGACAC
CGACGCTGAACGAGACCAAAGGTTAG

Upstream 100 bases:

>100_bases
TATGTGATGAGAGTTTTATGGATAAACTATCCGTGAACGGCACAGCAGCGCCCTTCGGTATGCCCCTTGCACTATTTCAC
CAAGAAGGTGTCTATGGCGC

Downstream 100 bases:

>100_bases
CGTCGTTTTTATTGATTGACGGATCAATCAAAATCCTTTTAGGGATGGCTTGCGTGCTCAGACCCGGAGGGAAAATGCCA
AAAGTTGGAATGGAACCGAT

Product: integral membrane protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MSMTKTSQPLTGIFWMLVTGICFISVTALVKFMGTGLPPAQMAFLRYLLGLVFLIPAIGALRAAHLTPRQWKLFGFRGVI
HGLGVISWFYAMTRIPLADVTAMNYLAPIYVTIGAAVFLGEKLAFRRIAAVVMALIGAFIILRPGFRDISSGHFAMLFTA
LAFGASYLTAKVTADEVKPSVVVAMLSIFVTIVLAPFALINWVTPTLWELFLLFCIACCAVAGHYTMTLAFAAAPVTVTQ
PVTFTQLIWAVLLGYFAFGEAVDIWVVIGGVVILSSVTFITWREAVLKRKPTTPTLNETKG

Sequences:

>Translated_301_residues
MSMTKTSQPLTGIFWMLVTGICFISVTALVKFMGTGLPPAQMAFLRYLLGLVFLIPAIGALRAAHLTPRQWKLFGFRGVI
HGLGVISWFYAMTRIPLADVTAMNYLAPIYVTIGAAVFLGEKLAFRRIAAVVMALIGAFIILRPGFRDISSGHFAMLFTA
LAFGASYLTAKVTADEVKPSVVVAMLSIFVTIVLAPFALINWVTPTLWELFLLFCIACCAVAGHYTMTLAFAAAPVTVTQ
PVTFTQLIWAVLLGYFAFGEAVDIWVVIGGVVILSSVTFITWREAVLKRKPTTPTLNETKG
>Mature_300_residues
SMTKTSQPLTGIFWMLVTGICFISVTALVKFMGTGLPPAQMAFLRYLLGLVFLIPAIGALRAAHLTPRQWKLFGFRGVIH
GLGVISWFYAMTRIPLADVTAMNYLAPIYVTIGAAVFLGEKLAFRRIAAVVMALIGAFIILRPGFRDISSGHFAMLFTAL
AFGASYLTAKVTADEVKPSVVVAMLSIFVTIVLAPFALINWVTPTLWELFLLFCIACCAVAGHYTMTLAFAAAPVTVTQP
VTFTQLIWAVLLGYFAFGEAVDIWVVIGGVVILSSVTFITWREAVLKRKPTTPTLNETKG

Specific function: Transports S-adenosylmethionine [H]

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32741; Mature: 32610

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMTKTSQPLTGIFWMLVTGICFISVTALVKFMGTGLPPAQMAFLRYLLGLVFLIPAIGA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
LRAAHLTPRQWKLFGFRGVIHGLGVISWFYAMTRIPLADVTAMNYLAPIYVTIGAAVFLG
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
EKLAFRRIAAVVMALIGAFIILRPGFRDISSGHFAMLFTALAFGASYLTAKVTADEVKPS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHH
VVVAMLSIFVTIVLAPFALINWVTPTLWELFLLFCIACCAVAGHYTMTLAFAAAPVTVTQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC
PVTFTQLIWAVLLGYFAFGEAVDIWVVIGGVVILSSVTFITWREAVLKRKPTTPTLNETK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
G
C
>Mature Secondary Structure 
SMTKTSQPLTGIFWMLVTGICFISVTALVKFMGTGLPPAQMAFLRYLLGLVFLIPAIGA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH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C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA