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The map label for this gene is yebC [C]

Identifier: 110679300

GI number: 110679300

Start: 1925358

End: 1926098

Strand: Direct

Name: yebC [C]

Synonym: RD1_2018

Alternate gene names: 110679300

Gene position: 1925358-1926098 (Clockwise)

Preceding gene: 110679296

Following gene: 110679302

Centisome position: 46.58

GC content: 57.49

Gene sequence:

>741_bases
ATGGCAGGCCACTCAAAATGGGCAAACATCCAGCACCGCAAAGGGCGCCAGGACGCCGTGCGGGCAAAGCTCTTCTCCAA
ACTCAGCAAGGAGATCACAGTTGCTGCGAAAATGGGCGATCCTGATCCTGACAAGAACCCGCGCCTGCGCCTGGCGGTAA
AAGAGGCCAAATCGCAGTCCATGCCCAAGGATAATATTGATCGCGCGATCAAGAAGTCCCAAGCCGGGGATGGCGACGAG
TACGAAGAAATCCGTTATGAGGGCTACGGCCCGAATGGCGTTGCAGTGATCGTTGAAGCGATGACTGACAATCGTAATCG
CACAGCGTCAACAGTGCGGTCGACCTTTACCAAGAATGGCGGCAACCTTGGCGAAACCGGCAGCGTCGGTTTCATGTTCG
ACCGCAAGGGCACGGTCACCTATCCGGCGGATGTCGGGGACGCGGACACGGTGCTGATGGCGGCGATCGAAGCCGGAGCA
GAGGATGTTGAAAGCTCCGAAGATGGCCATGTTATCTGGTGCGCGGATACGGATCTCAACGAGGTTGCGACCGCGCTGGA
GGCCGAGTTGGGCGAAAGCGAGCAGACCAAACTGGTATGGCGGCCGACGACCACGACAGAATTGGACCTTGAGGGAATGC
AAAAGCTGATGCGCTTGATCGAGGCCCTTGAAGATGATGACGACGTGCAGCGGGTCACGGCCAATTTCGAAGCCTCGGAT
GAGGTGATGGAGCAGCTTTAA

Upstream 100 bases:

>100_bases
TGCGGCGCGGCATCAAATTACGCATCCGTGCGGCCTTGCCCCTTCCAGCGCTCCTGTTTTATAGAAAACGCTCACGGTGA
AGTCAGGGACGGAAAACGAA

Downstream 100 bases:

>100_bases
CGCCAGAACCCGTCTGCTCAATGCACCATATCTGCGACGGGTTCGACATTCAGCCGGACGTTTTTTGCCCTGTGAGCATC
ATACGCGCCATCTGGGCCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MAGHSKWANIQHRKGRQDAVRAKLFSKLSKEITVAAKMGDPDPDKNPRLRLAVKEAKSQSMPKDNIDRAIKKSQAGDGDE
YEEIRYEGYGPNGVAVIVEAMTDNRNRTASTVRSTFTKNGGNLGETGSVGFMFDRKGTVTYPADVGDADTVLMAAIEAGA
EDVESSEDGHVIWCADTDLNEVATALEAELGESEQTKLVWRPTTTTELDLEGMQKLMRLIEALEDDDDVQRVTANFEASD
EVMEQL

Sequences:

>Translated_246_residues
MAGHSKWANIQHRKGRQDAVRAKLFSKLSKEITVAAKMGDPDPDKNPRLRLAVKEAKSQSMPKDNIDRAIKKSQAGDGDE
YEEIRYEGYGPNGVAVIVEAMTDNRNRTASTVRSTFTKNGGNLGETGSVGFMFDRKGTVTYPADVGDADTVLMAAIEAGA
EDVESSEDGHVIWCADTDLNEVATALEAELGESEQTKLVWRPTTTTELDLEGMQKLMRLIEALEDDDDVQRVTANFEASD
EVMEQL
>Mature_245_residues
AGHSKWANIQHRKGRQDAVRAKLFSKLSKEITVAAKMGDPDPDKNPRLRLAVKEAKSQSMPKDNIDRAIKKSQAGDGDEY
EEIRYEGYGPNGVAVIVEAMTDNRNRTASTVRSTFTKNGGNLGETGSVGFMFDRKGTVTYPADVGDADTVLMAAIEAGAE
DVESSEDGHVIWCADTDLNEVATALEAELGESEQTKLVWRPTTTTELDLEGMQKLMRLIEALEDDDDVQRVTANFEASDE
VMEQL

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=248, Percent_Identity=31.8548387096774, Blast_Score=125, Evalue=5e-29,
Organism=Escherichia coli, GI1788171, Length=248, Percent_Identity=49.1935483870968, Blast_Score=236, Evalue=1e-63,
Organism=Escherichia coli, GI1788294, Length=231, Percent_Identity=39.3939393939394, Blast_Score=171, Evalue=5e-44,
Organism=Caenorhabditis elegans, GI17556100, Length=242, Percent_Identity=26.8595041322314, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6321458, Length=264, Percent_Identity=33.3333333333333, Blast_Score=122, Evalue=5e-29,
Organism=Drosophila melanogaster, GI24583305, Length=245, Percent_Identity=28.9795918367347, Blast_Score=89, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2018_ROSDO (Q168H2)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_682307.1
- ProteinModelPortal:   Q168H2
- SMR:   Q168H2
- STRING:   Q168H2
- GeneID:   4196724
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_2018
- NMPDR:   fig|375451.6.peg.1884
- eggNOG:   COG0217
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- PhylomeDB:   Q168H2
- ProtClustDB:   PRK00110
- BioCyc:   RDEN375451:RD1_2018-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26987; Mature: 26856

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSKWANIQHRKGRQDAVRAKLFSKLSKEITVAAKMGDPDPDKNPRLRLAVKEAKSQS
CCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEHHHHCC
MPKDNIDRAIKKSQAGDGDEYEEIRYEGYGPNGVAVIVEAMTDNRNRTASTVRSTFTKNG
CCHHHHHHHHHHHCCCCCCCHHHHEECCCCCCCCEEEEEEHHCCCCHHHHHHHHHHHCCC
GNLGETGSVGFMFDRKGTVTYPADVGDADTVLMAAIEAGAEDVESSEDGHVIWCADTDLN
CCCCCCCCEEEEEECCCCEECCCCCCCHHHHHHHHHHHCHHHHCCCCCCCEEEEECCCHH
EVATALEAELGESEQTKLVWRPTTTTELDLEGMQKLMRLIEALEDDDDVQRVTANFEASD
HHHHHHHHHCCCCCCCEEEECCCCCCEECHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHH
EVMEQL
HHHHHC
>Mature Secondary Structure 
AGHSKWANIQHRKGRQDAVRAKLFSKLSKEITVAAKMGDPDPDKNPRLRLAVKEAKSQS
CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEHHHHCC
MPKDNIDRAIKKSQAGDGDEYEEIRYEGYGPNGVAVIVEAMTDNRNRTASTVRSTFTKNG
CCHHHHHHHHHHHCCCCCCCHHHHEECCCCCCCCEEEEEEHHCCCCHHHHHHHHHHHCCC
GNLGETGSVGFMFDRKGTVTYPADVGDADTVLMAAIEAGAEDVESSEDGHVIWCADTDLN
CCCCCCCCEEEEEECCCCEECCCCCCCHHHHHHHHHHHCHHHHCCCCCCCEEEEECCCHH
EVATALEAELGESEQTKLVWRPTTTTELDLEGMQKLMRLIEALEDDDDVQRVTANFEASD
HHHHHHHHHCCCCCCCEEEECCCCCCEECHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHH
EVMEQL
HHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA