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The map label for this gene is ymdB [H]

Identifier: 110679294

GI number: 110679294

Start: 1919056

End: 1919868

Strand: Direct

Name: ymdB [H]

Synonym: RD1_2012

Alternate gene names: 110679294

Gene position: 1919056-1919868 (Clockwise)

Preceding gene: 110679293

Following gene: 110679295

Centisome position: 46.43

GC content: 61.75

Gene sequence:

>813_bases
ATGAAAATCTTGTTTCTTGGCGACGTCATGGGCCGGGCCGGGCGGCGCGCAATCACGGAAAACCTGCCGCGACTGAGGCA
GGAATGGCGGTTGGATTTCGTTGTTGTGAACAGCGAAAACGCAACCTCTGGCATGGGGCTGTCGGGCAGCCATGCAAAGA
TCCTGCTGGAGGCGGGGGCAGATTGCCTGACGCTGGGGGATCATGCCTTTGATCAAAAGGACATGCTGCAATTCATCCAG
CACGAACCGCGCATCCTGAGACCTCTTAATTTCTCCAAGGCCGCACCCGGCAAGGGCGCGCGTCTGTTCACCGCCCAAAA
CGGGCGCAAGGTTCTGGTGGCGCAGGTCCTCGGGCAGGTGTTCATGAAGCGGCCCTTTGATGATCCGTTTTCGGCGCTTG
AACCGGTTCTGAAAACGCACCCGCTGGGCGGGCAGGCGGCGGCGGTGCTTGTGGATATCCATTGCGAAGCGACCTCGGAG
AAAATGGCGCTGGGGCACTTTTGCGACGGGCGGGCCAGCCTTGCCGTGGGCACGCATACCCATGTGCCGACCGCTGATGC
GATGGTGCTGCCGGGGGGCACAGGCTATTTGACGGATGCGGGCATGTGCGGGGATTATCACTCCGTGATCGGCATGGAAA
AATCCGAACCCCTGCGCCGGTTTATCACAGGCATGCCCAAGGAACGCTTCACGCCCGCGACCGGAACAGCCACCCTGTCG
GGCGTTTATGTCGAGACCGATGACCGCACCGGCAAGGCCACCCGAATCGCCATGGTGCGAGACGGGGGGATACTGCAAGC
CGCCGCGCCATGA

Upstream 100 bases:

>100_bases
TGTCCTGTTAAAGGGTGCGGCACCGTCGGTCTTTGCATGGGCGTCAGAAATATGTTTCCCGGCTCTTGCCCTGATCGTAT
CGCGGGCCTAGGCATCTTGC

Downstream 100 bases:

>100_bases
CCCGTCGGGAAACCGTGTTTTTCACCTGCGTTCTGGTGCTGCTGGGGGCCGGGTGGGGCGTGACGATCCCGCTCACCAAA
ATCGCGGTGTCGACCGGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MKILFLGDVMGRAGRRAITENLPRLRQEWRLDFVVVNSENATSGMGLSGSHAKILLEAGADCLTLGDHAFDQKDMLQFIQ
HEPRILRPLNFSKAAPGKGARLFTAQNGRKVLVAQVLGQVFMKRPFDDPFSALEPVLKTHPLGGQAAAVLVDIHCEATSE
KMALGHFCDGRASLAVGTHTHVPTADAMVLPGGTGYLTDAGMCGDYHSVIGMEKSEPLRRFITGMPKERFTPATGTATLS
GVYVETDDRTGKATRIAMVRDGGILQAAAP

Sequences:

>Translated_270_residues
MKILFLGDVMGRAGRRAITENLPRLRQEWRLDFVVVNSENATSGMGLSGSHAKILLEAGADCLTLGDHAFDQKDMLQFIQ
HEPRILRPLNFSKAAPGKGARLFTAQNGRKVLVAQVLGQVFMKRPFDDPFSALEPVLKTHPLGGQAAAVLVDIHCEATSE
KMALGHFCDGRASLAVGTHTHVPTADAMVLPGGTGYLTDAGMCGDYHSVIGMEKSEPLRRFITGMPKERFTPATGTATLS
GVYVETDDRTGKATRIAMVRDGGILQAAAP
>Mature_270_residues
MKILFLGDVMGRAGRRAITENLPRLRQEWRLDFVVVNSENATSGMGLSGSHAKILLEAGADCLTLGDHAFDQKDMLQFIQ
HEPRILRPLNFSKAAPGKGARLFTAQNGRKVLVAQVLGQVFMKRPFDDPFSALEPVLKTHPLGGQAAAVLVDIHCEATSE
KMALGHFCDGRASLAVGTHTHVPTADAMVLPGGTGYLTDAGMCGDYHSVIGMEKSEPLRRFITGMPKERFTPATGTATLS
GVYVETDDRTGKATRIAMVRDGGILQAAAP

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29011; Mature: 29011

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILFLGDVMGRAGRRAITENLPRLRQEWRLDFVVVNSENATSGMGLSGSHAKILLEAGA
CEEEEEEHHHCCCCHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCEEEEEECCC
DCLTLGDHAFDQKDMLQFIQHEPRILRPLNFSKAAPGKGARLFTAQNGRKVLVAQVLGQV
CEEEECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCEEEEEECCCCEEHHHHHHHHH
FMKRPFDDPFSALEPVLKTHPLGGQAAAVLVDIHCEATSEKMALGHFCDGRASLAVGTHT
HHHCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCCEEEECCCC
HVPTADAMVLPGGTGYLTDAGMCGDYHSVIGMEKSEPLRRFITGMPKERFTPATGTATLS
CCCCCCEEEECCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCHHHCCCCCCCEEEE
GVYVETDDRTGKATRIAMVRDGGILQAAAP
EEEEEECCCCCCEEEEEEEECCCEEEECCC
>Mature Secondary Structure
MKILFLGDVMGRAGRRAITENLPRLRQEWRLDFVVVNSENATSGMGLSGSHAKILLEAGA
CEEEEEEHHHCCCCHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCEEEEEECCC
DCLTLGDHAFDQKDMLQFIQHEPRILRPLNFSKAAPGKGARLFTAQNGRKVLVAQVLGQV
CEEEECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCEEEEEECCCCEEHHHHHHHHH
FMKRPFDDPFSALEPVLKTHPLGGQAAAVLVDIHCEATSEKMALGHFCDGRASLAVGTHT
HHHCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCCEEEECCCC
HVPTADAMVLPGGTGYLTDAGMCGDYHSVIGMEKSEPLRRFITGMPKERFTPATGTATLS
CCCCCCEEEECCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCHHHCCCCCCCEEEE
GVYVETDDRTGKATRIAMVRDGGILQAAAP
EEEEEECCCCCCEEEEEEEECCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]