| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is glmM
Identifier: 110679239
GI number: 110679239
Start: 1864737
End: 1866086
Strand: Direct
Name: glmM
Synonym: RD1_1952
Alternate gene names: 110679239
Gene position: 1864737-1866086 (Clockwise)
Preceding gene: 110679238
Following gene: 110679242
Centisome position: 45.12
GC content: 60.0
Gene sequence:
>1350_bases ATGGATAAGCTTTTTGGAACGGATGGGGTGCGCGGCAAGGCCAATGAGCACCCGATGACAGCCGAGATGGCACTGCGTAT CGGTGCTGCGGTAGGTAAATACTTCAGGCGCGATGGATCGGCAGCGCATCGCGTTGTGATCGGCAAGGATACGCGATTAT CAGGCTATATGTTCGAAAACGCGCTGACGGCAGGGCTGACCTCAACGGGCATGAATGTGCTGTTGCTGGGTCCGGTGCCG ACGCCTGCGGTCGGTCTGCTGACACGGTCGATGCGCGCGGACCTTGGGGTGATGATCTCGGCCAGCCATAACCCGGCCTG TGACAATGGCATCAAGTTCTTTGGCCCTGACGGATTCAAACTGTCGGATCAGGCCGAAGAGGAGATCGAAGCGCTGATCG CGTCCGGCGTCGATGCCGTGGAAGCGAATGACATCGGGCGGGCCAAACGCATTGATGATGGGCGTTTTCGCTACATCGAA CGGCTCAAGACCTCCTTTCCTCGCCAGCGGCGGCTTGACGGGCTGAAAGTTGTGATTGATTGCGCAAATGGCGCGGCACA CCGCGTCGCACCAGAGGCGCTATGGGAACTGGGTGCGACGGTCATTCCTGTTGGCGTGTCTCCGAACGGCAAGAACATCA ACGAGGGCTGCGGGTCAACGCATCCGCAATTCGCGGCAGATACGGTCGTCGCCCATGGTGCTGACGTGGGCATCTGCCTT GACGGCGATGCGGACCGCGTGATCCTGATTGATGAGACCGGCAAGGTTGGCGATGGTGACCAGTTCATGGCACTGATGGC GCAACGCTGGGCGGAACGCGGCAAACTGGCGAATAATGCGCTGGTCGCGACGGTAATGTCCAACCTTGGTTTGGAGCATT TTCTGAGCGATCTGGGTCTGAAACTGGAGCGCACGGCGGTTGGCGACCGATACGTGGTCGAACGGATGCGTGCCGGTGGC TTCAACCTCGGGGGGGAGCAATCAGGTCACATTGTGATGACCGATTATGCAACCACGGGGGATGGCCTCATGGCGGGGTT GCAGTTTCTCGCGGCGATGACGCAGTCCGAACAGCCTGCGAGTGTCTTGCTCAACCGGTTTGAACCGGTGCCGCAACTGC TCAGGAACGTGCGATTTGCAGCAGGTCAAACCCCGCTTGAGGACGCCCGCGTGAAAGCCGCGATTGCGGCGGCGGAGGCT GACCTGTCCGGCAAGGGGCGTTTGCTGATCCGTAAATCTGGCACCGAACCACTGGTGCGCGTGATGGCAGAACATGAGGA TCAAACGGTGATGGAGCAGGCGGTCGACAGTGTTGTCGAAGCGGTCGCGGATGCTGTCGGCGGAACGTAA
Upstream 100 bases:
>100_bases GCGGCTTTGAAACATGGGACACAAATTGTGCGCGTCCATGACGTGCCACAGACCCTGCAGGCCATTGCGCTTTGGCGCGC GGTCGTGGCAGGACAGGGGC
Downstream 100 bases:
>100_bases AGCGTCGGGCGACTTGCCAGACCATCTCATATCATCCAAGGGCCGAAGTCTCTGATTTCAGCCAGCCGGGGGGTGATTCA GGCTTTGCGCATGGCACTTT
Product: phosphoglucosamine mutase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 449; Mature: 449
Protein sequence:
>449_residues MDKLFGTDGVRGKANEHPMTAEMALRIGAAVGKYFRRDGSAAHRVVIGKDTRLSGYMFENALTAGLTSTGMNVLLLGPVP TPAVGLLTRSMRADLGVMISASHNPACDNGIKFFGPDGFKLSDQAEEEIEALIASGVDAVEANDIGRAKRIDDGRFRYIE RLKTSFPRQRRLDGLKVVIDCANGAAHRVAPEALWELGATVIPVGVSPNGKNINEGCGSTHPQFAADTVVAHGADVGICL DGDADRVILIDETGKVGDGDQFMALMAQRWAERGKLANNALVATVMSNLGLEHFLSDLGLKLERTAVGDRYVVERMRAGG FNLGGEQSGHIVMTDYATTGDGLMAGLQFLAAMTQSEQPASVLLNRFEPVPQLLRNVRFAAGQTPLEDARVKAAIAAAEA DLSGKGRLLIRKSGTEPLVRVMAEHEDQTVMEQAVDSVVEAVADAVGGT
Sequences:
>Translated_449_residues MDKLFGTDGVRGKANEHPMTAEMALRIGAAVGKYFRRDGSAAHRVVIGKDTRLSGYMFENALTAGLTSTGMNVLLLGPVP TPAVGLLTRSMRADLGVMISASHNPACDNGIKFFGPDGFKLSDQAEEEIEALIASGVDAVEANDIGRAKRIDDGRFRYIE RLKTSFPRQRRLDGLKVVIDCANGAAHRVAPEALWELGATVIPVGVSPNGKNINEGCGSTHPQFAADTVVAHGADVGICL DGDADRVILIDETGKVGDGDQFMALMAQRWAERGKLANNALVATVMSNLGLEHFLSDLGLKLERTAVGDRYVVERMRAGG FNLGGEQSGHIVMTDYATTGDGLMAGLQFLAAMTQSEQPASVLLNRFEPVPQLLRNVRFAAGQTPLEDARVKAAIAAAEA DLSGKGRLLIRKSGTEPLVRVMAEHEDQTVMEQAVDSVVEAVADAVGGT >Mature_449_residues MDKLFGTDGVRGKANEHPMTAEMALRIGAAVGKYFRRDGSAAHRVVIGKDTRLSGYMFENALTAGLTSTGMNVLLLGPVP TPAVGLLTRSMRADLGVMISASHNPACDNGIKFFGPDGFKLSDQAEEEIEALIASGVDAVEANDIGRAKRIDDGRFRYIE RLKTSFPRQRRLDGLKVVIDCANGAAHRVAPEALWELGATVIPVGVSPNGKNINEGCGSTHPQFAADTVVAHGADVGICL DGDADRVILIDETGKVGDGDQFMALMAQRWAERGKLANNALVATVMSNLGLEHFLSDLGLKLERTAVGDRYVVERMRAGG FNLGGEQSGHIVMTDYATTGDGLMAGLQFLAAMTQSEQPASVLLNRFEPVPQLLRNVRFAAGQTPLEDARVKAAIAAAEA DLSGKGRLLIRKSGTEPLVRVMAEHEDQTVMEQAVDSVVEAVADAVGGT
Specific function: Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
COG id: COG1109
COG function: function code G; Phosphomannomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family
Homologues:
Organism=Escherichia coli, GI1789566, Length=445, Percent_Identity=49.438202247191, Blast_Score=401, Evalue=1e-113, Organism=Escherichia coli, GI1788361, Length=468, Percent_Identity=28.4188034188034, Blast_Score=121, Evalue=9e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): GLMM_ROSDO (Q168N3)
Other databases:
- EMBL: CP000362 - RefSeq: YP_682246.1 - ProteinModelPortal: Q168N3 - SMR: Q168N3 - STRING: Q168N3 - GeneID: 4196774 - GenomeReviews: CP000362_GR - KEGG: rde:RD1_1952 - NMPDR: fig|375451.6.peg.1824 - eggNOG: COG1109 - HOGENOM: HBG644964 - OMA: EEAGINS - PhylomeDB: Q168N3 - ProtClustDB: PRK14315 - BioCyc: RDEN375451:RD1_1952-MONOMER - HAMAP: MF_01554_B - InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - InterPro: IPR005841 - InterPro: IPR006352 - Gene3D: G3DSA:3.40.120.10 - PRINTS: PR00509 - TIGRFAMs: TIGR01455
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV; SSF53738 A-D-PHexomutase_a/b/a-I/II/III
EC number: =5.4.2.10
Molecular weight: Translated: 47692; Mature: 47692
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS00710 PGM_PMM
Important sites: ACT_SITE 102-102
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKLFGTDGVRGKANEHPMTAEMALRIGAAVGKYFRRDGSAAHRVVIGKDTRLSGYMFEN CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH ALTAGLTSTGMNVLLLGPVPTPAVGLLTRSMRADLGVMISASHNPACDNGIKFFGPDGFK HHHHCHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEECCCCCC LSDQAEEEIEALIASGVDAVEANDIGRAKRIDDGRFRYIERLKTSFPRQRRLDGLKVVID CCCHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHCCHHHCCCCEEEEEE CANGAAHRVAPEALWELGATVIPVGVSPNGKNINEGCGSTHPQFAADTVVAHGADVGICL CCCCCCHHCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEE DGDADRVILIDETGKVGDGDQFMALMAQRWAERGKLANNALVATVMSNLGLEHFLSDLGL CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHCC KLERTAVGDRYVVERMRAGGFNLGGEQSGHIVMTDYATTGDGLMAGLQFLAAMTQSEQPA EEEEHHCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHH SVLLNRFEPVPQLLRNVRFAAGQTPLEDARVKAAIAAAEADLSGKGRLLIRKSGTEPLVR HHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHH VMAEHEDQTVMEQAVDSVVEAVADAVGGT HHHHCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDKLFGTDGVRGKANEHPMTAEMALRIGAAVGKYFRRDGSAAHRVVIGKDTRLSGYMFEN CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH ALTAGLTSTGMNVLLLGPVPTPAVGLLTRSMRADLGVMISASHNPACDNGIKFFGPDGFK HHHHCHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEECCCCCC LSDQAEEEIEALIASGVDAVEANDIGRAKRIDDGRFRYIERLKTSFPRQRRLDGLKVVID CCCHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHCCHHHCCCCEEEEEE CANGAAHRVAPEALWELGATVIPVGVSPNGKNINEGCGSTHPQFAADTVVAHGADVGICL CCCCCCHHCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEE DGDADRVILIDETGKVGDGDQFMALMAQRWAERGKLANNALVATVMSNLGLEHFLSDLGL CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHCC KLERTAVGDRYVVERMRAGGFNLGGEQSGHIVMTDYATTGDGLMAGLQFLAAMTQSEQPA EEEEHHCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHH SVLLNRFEPVPQLLRNVRFAAGQTPLEDARVKAAIAAAEADLSGKGRLLIRKSGTEPLVR HHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHH VMAEHEDQTVMEQAVDSVVEAVADAVGGT HHHHCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA