| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is folB
Identifier: 110679237
GI number: 110679237
Start: 1862805
End: 1863728
Strand: Direct
Name: folB
Synonym: RD1_1950
Alternate gene names: NA
Gene position: 1862805-1863728 (Clockwise)
Preceding gene: 110679236
Following gene: 110679238
Centisome position: 45.07
GC content: 60.39
Gene sequence:
>924_bases ATGAGTTCCGAAATACGGCTTGCCTTTGCGCATCCTTCCGAAAGGTCCGAGGCGACGGCTGACACGACACCATTGGATCG CATCTCCTTGCGCGATCATATCGTCGAGGTTGAGATCGGCGCGTTTCAGGCCGAGCGTGGGGTCACCCAGCGGATTTGCT TCAACGTCGTGGTCGAGGTGCAGCCGCTGACGGGGCCGATTGACGACGATGTCGACCGCATTCTGAGCTATGACCGCGTC ACCGAAGCCATCGCCGGCGCGCTTGCCGATGAACGCCTCAACCTGCTTGAGACACTGGCGGAGCGCGTTGCGGAACGCAT TTTGCTGGAACCGCAGGCCACACGGGCATTTGTTCGCATCGAAAAGCTGGACCGGGGTCCGGGCGCGCTGGGTGTGGAGA TTGTGCGCTCTGCCAAGATGCTGACCGCCGCGCCGGAAGAGGAAATTACAACCGTCCGACCCGAATTGCTCTATCTCAGC AACGAGGCCATCGCTTCACCACATCTGAAAAAATGGATTGATCAGCTTGAAAAATCCGGCCGCCCGCTGGTGTTTTGTGT CGGCGCATCCGACACGCGCGCCCCGCAGATCAATCACCGCATGACGCAGCGCCGGATCGACCTGTTGGCCATCGAACAAA ACGCTTGGGTGCTGGCTTCAAAGGACGACCGCTGCGTGGTGGTTTCCACGCGCACGGAACTTGATTGGGCCATGAAAAAC GGCCAATCCTCGGTATGGGCACCCTCAAAGATCGTCCTTGACGCTGTGGATGGCCCATCCGCGCAACCGCGCGATGCCGT GGCCTTGGCTGCTTGGTTTGCGGCCACCCTCGGGGCACGGGAAATGGTCGTGATCGGGGCGGAATTGCCCAGTGAGGCTT CTGTGCCTTTGCGCCATGTCTCCGCCGACGCTGAAGTCTGGTAA
Upstream 100 bases:
>100_bases CAACTGACGTATTCCAGACCCAGAGTGGCGGTCTGCGCTTTGCGCCCCGGCGCGCTTTCGTTAAGATGCGCGTAATGTTC AGGGAAAAGAGGCGCTTTGA
Downstream 100 bases:
>100_bases ACATGCAGCCCTATTTTCGACCGCTCTTGCAATCGGGGCCTGTGCGTCCGCGCAGTGCCGTCACGCTGGCCGGGGGCTGG ACGTGGTTTACAGATATCGA
Product: dihydroneopterin aldolase, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 307; Mature: 306
Protein sequence:
>307_residues MSSEIRLAFAHPSERSEATADTTPLDRISLRDHIVEVEIGAFQAERGVTQRICFNVVVEVQPLTGPIDDDVDRILSYDRV TEAIAGALADERLNLLETLAERVAERILLEPQATRAFVRIEKLDRGPGALGVEIVRSAKMLTAAPEEEITTVRPELLYLS NEAIASPHLKKWIDQLEKSGRPLVFCVGASDTRAPQINHRMTQRRIDLLAIEQNAWVLASKDDRCVVVSTRTELDWAMKN GQSSVWAPSKIVLDAVDGPSAQPRDAVALAAWFAATLGAREMVVIGAELPSEASVPLRHVSADAEVW
Sequences:
>Translated_307_residues MSSEIRLAFAHPSERSEATADTTPLDRISLRDHIVEVEIGAFQAERGVTQRICFNVVVEVQPLTGPIDDDVDRILSYDRV TEAIAGALADERLNLLETLAERVAERILLEPQATRAFVRIEKLDRGPGALGVEIVRSAKMLTAAPEEEITTVRPELLYLS NEAIASPHLKKWIDQLEKSGRPLVFCVGASDTRAPQINHRMTQRRIDLLAIEQNAWVLASKDDRCVVVSTRTELDWAMKN GQSSVWAPSKIVLDAVDGPSAQPRDAVALAAWFAATLGAREMVVIGAELPSEASVPLRHVSADAEVW >Mature_306_residues SSEIRLAFAHPSERSEATADTTPLDRISLRDHIVEVEIGAFQAERGVTQRICFNVVVEVQPLTGPIDDDVDRILSYDRVT EAIAGALADERLNLLETLAERVAERILLEPQATRAFVRIEKLDRGPGALGVEIVRSAKMLTAAPEEEITTVRPELLYLSN EAIASPHLKKWIDQLEKSGRPLVFCVGASDTRAPQINHRMTQRRIDLLAIEQNAWVLASKDDRCVVVSTRTELDWAMKNG QSSVWAPSKIVLDAVDGPSAQPRDAVALAAWFAATLGAREMVVIGAELPSEASVPLRHVSADAEVW
Specific function: Unknown
COG id: COG1539
COG function: function code H; Dihydroneopterin aldolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33754; Mature: 33623
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSEIRLAFAHPSERSEATADTTPLDRISLRDHIVEVEIGAFQAERGVTQRICFNVVVEV CCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHEEEEEEECCEEHHCCHHHHHHEEEEEEE QPLTGPIDDDVDRILSYDRVTEAIAGALADERLNLLETLAERVAERILLEPQATRAFVRI ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEE EKLDRGPGALGVEIVRSAKMLTAAPEEEITTVRPELLYLSNEAIASPHLKKWIDQLEKSG EHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECCCHHCCHHHHHHHHHHHHCC RPLVFCVGASDTRAPQINHRMTQRRIDLLAIEQNAWVLASKDDRCVVVSTRTELDWAMKN CCEEEEECCCCCCCCCHHHHHHHHHEEEEEEECCCEEEECCCCCEEEEEECCCHHHHHHC GQSSVWAPSKIVLDAVDGPSAQPRDAVALAAWFAATLGAREMVVIGAELPSEASVPLRHV CCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEE SADAEVW CCCCCCC >Mature Secondary Structure SSEIRLAFAHPSERSEATADTTPLDRISLRDHIVEVEIGAFQAERGVTQRICFNVVVEV CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHEEEEEEECCEEHHCCHHHHHHEEEEEEE QPLTGPIDDDVDRILSYDRVTEAIAGALADERLNLLETLAERVAERILLEPQATRAFVRI ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEE EKLDRGPGALGVEIVRSAKMLTAAPEEEITTVRPELLYLSNEAIASPHLKKWIDQLEKSG EHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECCCHHCCHHHHHHHHHHHHCC RPLVFCVGASDTRAPQINHRMTQRRIDLLAIEQNAWVLASKDDRCVVVSTRTELDWAMKN CCEEEEECCCCCCCCCHHHHHHHHHEEEEEEECCCEEEECCCCCEEEEEECCCHHHHHHC GQSSVWAPSKIVLDAVDGPSAQPRDAVALAAWFAATLGAREMVVIGAELPSEASVPLRHV CCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEE SADAEVW CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA