Click here to switch to the map view.

The map label for this gene is 110679231

Identifier: 110679231

GI number: 110679231

Start: 1853729

End: 1855501

Strand: Reverse

Name: 110679231

Synonym: RD1_1944

Alternate gene names: NA

Gene position: 1855501-1853729 (Counterclockwise)

Preceding gene: 110679240

Following gene: 110679227

Centisome position: 44.89

GC content: 63.06

Gene sequence:

>1773_bases
ATGACGAGACTTGTTTTGGTGTTATGTGTCTGGCTGAGCGGCCTTTCAGGCGCCGCGCGTGCGCAATCCGAAAGCGATCT
GGTATGGGTGCAGATAGAGGCCCGCCCGACCTATGACGCAGCGCTTGCGCGGGTTCAAAGCTATGCGGCCAGCCTGCCCG
ATGTGGCCGGATTTTCCGTGGCCGGCGGGTGGTATGCGGTGGCGCTTGGCCCCTATACGCCGGAGGATGCCGAACAGGTT
CTGACCACCTATCGCCAGCAGGGCCTGATACCGAATGACAGCTACATCGCGCTTGGCAGCAGTTATGCACAACAATACTG
GCCAATGGGCGTTGATGTGCTGGGGCTGGGCGCAATCGGCGCGCTTTCCGCGCAGGCGGAACCAGAGATCGTGCCCCCGG
TTCGGGCAGGCGAGCAGAGCGCGCAGTTGCAGGATGTCATCACCGCACAGGACACGGAAACCCCCGCACAGGCGCGTCGC
AGCGAAAGCCAGCTCACCGCAGCGCAGAAGCGCGAATTACAAACCGCGCTGCAATGGGCCGGCGTCTATACCGCTGCGAT
TGATGGCGCCTTTGGTCGCGGAACCCGCAACGCGATGGCCGCGTGGCAGCGCGATAACGGGTTTGAGGCCACGGGCGTTC
TCACAACGCAGCAGCGCGCAAGACTGCTTGCGGCCTATACGGCCATTCTCGACGGGCTGGATATGCGCATGGTGCGCGAT
ACAGAGGCAGGCCTTGCCGTCAAACTGCCGACAGCCGTGGTGCGTTTTCAAGGCTATGAAGCCCCCTTTGCACAATATGA
CAGCGTCGGTGATTTTGGTGCCCGCGTCCTGCTGATCAGCCAGAGCGGAGACCGGGATGGCCTTGCCGGGCTCTATGATA
TCCTGCAGACCCTGACGATTGTTCCGCTGGAGGGGCCACGCAGCCTGTCGCGCAACAGCTTTAAGATCGTGGGGCGTGGG
CCGGATTTCGTCAGCGAAACCGACGTGCGTTTGAACGGGGACGAAATCAAGGGGTTCATGCTGATCTGGCCGTTGGGCGA
TGATGCCCGCCGCGACCGGGTGCTGAAGGAAATGCGCGCGAGTTTCGAAAGCATCCCGGGCGTATTGGACCCGGGCGCGG
GTATTCCCGCCGCACAGCAGATCGACCTGTTTGCCGGGCTGGATGTGCGCAAGCCGACACTCTCGCGCTCCGGGTTTTAC
GTGGATGCGGCAGGGTCGGTCGTCACCACGGCGGCGGTGGTGGAAAGCTGCGCCCGCATCACGCTGGATGATCAGTTCGA
GGCGACACTTGCGGGCGTCGACCGGGAGCGCGGCATTGCCCTTTTGACACCAAATCAATCCCTCGTGCCGCCCGCATTTG
CCCAATTCAGCGCGCAGCCGCCCCGGCTTCAGTCCGACATCGCGGTTGCCGGCTATTCCTTTGAGGGGCAACTCGGCGCG
CCTTCACTCACATTCGGAACACTGGCCGACCTCAAGGGTCTGAGGGGCGAACGCGACCTTGGCCGATTGTCCGTGCAGGC
ATTGCCGGGTGATGCGGGCGGGCCAGTACTGGACAACAGCGGCCGTGTTCTGGGCATGTTGCTGCCCCGGATCGACAGCG
CGCGCCAACTGCCTGAGGATGTGCGCTTTGCACTCATCGGTCAGGCAATTGAACCAGTGATGGCGCAGGCCGGGCTGCGC
CCGCGCAAGGGTGATCAGACCGCCAGCCTTGACCCCGAAGACATTACCGACCTGGGGGTTGGCATGACCGTGCTTGTCAG
CTGTTGGGAATGA

Upstream 100 bases:

>100_bases
ATTGTATCTCAGACGATAAATTACCGGCCGACTTATGGTCAAACCGCTGATTTCCTGCTTATTGGTTCCCTGAACGGTGG
CCGTGAGGAATGGGACGGGA

Downstream 100 bases:

>100_bases
ACCCCTTACGCTATTTTCCGACGTCCGGCGTGACATAGATCAGCGTCGGTCCATCTGCTTCAAAGGCCGCCCGCACCGCG
TGCTGCAAAGCCTCCAGTGT

Product: peptidoglycan binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 590; Mature: 589

Protein sequence:

>590_residues
MTRLVLVLCVWLSGLSGAARAQSESDLVWVQIEARPTYDAALARVQSYAASLPDVAGFSVAGGWYAVALGPYTPEDAEQV
LTTYRQQGLIPNDSYIALGSSYAQQYWPMGVDVLGLGAIGALSAQAEPEIVPPVRAGEQSAQLQDVITAQDTETPAQARR
SESQLTAAQKRELQTALQWAGVYTAAIDGAFGRGTRNAMAAWQRDNGFEATGVLTTQQRARLLAAYTAILDGLDMRMVRD
TEAGLAVKLPTAVVRFQGYEAPFAQYDSVGDFGARVLLISQSGDRDGLAGLYDILQTLTIVPLEGPRSLSRNSFKIVGRG
PDFVSETDVRLNGDEIKGFMLIWPLGDDARRDRVLKEMRASFESIPGVLDPGAGIPAAQQIDLFAGLDVRKPTLSRSGFY
VDAAGSVVTTAAVVESCARITLDDQFEATLAGVDRERGIALLTPNQSLVPPAFAQFSAQPPRLQSDIAVAGYSFEGQLGA
PSLTFGTLADLKGLRGERDLGRLSVQALPGDAGGPVLDNSGRVLGMLLPRIDSARQLPEDVRFALIGQAIEPVMAQAGLR
PRKGDQTASLDPEDITDLGVGMTVLVSCWE

Sequences:

>Translated_590_residues
MTRLVLVLCVWLSGLSGAARAQSESDLVWVQIEARPTYDAALARVQSYAASLPDVAGFSVAGGWYAVALGPYTPEDAEQV
LTTYRQQGLIPNDSYIALGSSYAQQYWPMGVDVLGLGAIGALSAQAEPEIVPPVRAGEQSAQLQDVITAQDTETPAQARR
SESQLTAAQKRELQTALQWAGVYTAAIDGAFGRGTRNAMAAWQRDNGFEATGVLTTQQRARLLAAYTAILDGLDMRMVRD
TEAGLAVKLPTAVVRFQGYEAPFAQYDSVGDFGARVLLISQSGDRDGLAGLYDILQTLTIVPLEGPRSLSRNSFKIVGRG
PDFVSETDVRLNGDEIKGFMLIWPLGDDARRDRVLKEMRASFESIPGVLDPGAGIPAAQQIDLFAGLDVRKPTLSRSGFY
VDAAGSVVTTAAVVESCARITLDDQFEATLAGVDRERGIALLTPNQSLVPPAFAQFSAQPPRLQSDIAVAGYSFEGQLGA
PSLTFGTLADLKGLRGERDLGRLSVQALPGDAGGPVLDNSGRVLGMLLPRIDSARQLPEDVRFALIGQAIEPVMAQAGLR
PRKGDQTASLDPEDITDLGVGMTVLVSCWE
>Mature_589_residues
TRLVLVLCVWLSGLSGAARAQSESDLVWVQIEARPTYDAALARVQSYAASLPDVAGFSVAGGWYAVALGPYTPEDAEQVL
TTYRQQGLIPNDSYIALGSSYAQQYWPMGVDVLGLGAIGALSAQAEPEIVPPVRAGEQSAQLQDVITAQDTETPAQARRS
ESQLTAAQKRELQTALQWAGVYTAAIDGAFGRGTRNAMAAWQRDNGFEATGVLTTQQRARLLAAYTAILDGLDMRMVRDT
EAGLAVKLPTAVVRFQGYEAPFAQYDSVGDFGARVLLISQSGDRDGLAGLYDILQTLTIVPLEGPRSLSRNSFKIVGRGP
DFVSETDVRLNGDEIKGFMLIWPLGDDARRDRVLKEMRASFESIPGVLDPGAGIPAAQQIDLFAGLDVRKPTLSRSGFYV
DAAGSVVTTAAVVESCARITLDDQFEATLAGVDRERGIALLTPNQSLVPPAFAQFSAQPPRLQSDIAVAGYSFEGQLGAP
SLTFGTLADLKGLRGERDLGRLSVQALPGDAGGPVLDNSGRVLGMLLPRIDSARQLPEDVRFALIGQAIEPVMAQAGLRP
RKGDQTASLDPEDITDLGVGMTVLVSCWE

Specific function: Unknown

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S1B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009003
- InterPro:   IPR001254
- InterPro:   IPR001940 [H]

Pfam domain/function: PF00089 Trypsin [H]

EC number: NA

Molecular weight: Translated: 62917; Mature: 62786

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLVLVLCVWLSGLSGAARAQSESDLVWVQIEARPTYDAALARVQSYAASLPDVAGFSV
CHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEE
AGGWYAVALGPYTPEDAEQVLTTYRQQGLIPNDSYIALGSSYAQQYWPMGVDVLGLGAIG
CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHCCCCCCEEECCCHH
ALSAQAEPEIVPPVRAGEQSAQLQDVITAQDTETPAQARRSESQLTAAQKRELQTALQWA
HCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GVYTAAIDGAFGRGTRNAMAAWQRDNGFEATGVLTTQQRARLLAAYTAILDGLDMRMVRD
HHHEEHHCCCCCCCCHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEC
TEAGLAVKLPTAVVRFQGYEAPFAQYDSVGDFGARVLLISQSGDRDGLAGLYDILQTLTI
CCCCEEEECCCEEEEECCCCCCHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHEE
VPLEGPRSLSRNSFKIVGRGPDFVSETDVRLNGDEIKGFMLIWPLGDDARRDRVLKEMRA
EECCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCEEEEEEECCCHHHHHHHHHHHHH
SFESIPGVLDPGAGIPAAQQIDLFAGLDVRKPTLSRSGFYVDAAGSVVTTAAVVESCARI
HHHHCCCCCCCCCCCCCHHHHHHEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHC
TLDDQFEATLAGVDRERGIALLTPNQSLVPPAFAQFSAQPPRLQSDIAVAGYSFEGQLGA
EECCCHHHHHHCCCHHCCEEEECCCCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCCCC
PSLTFGTLADLKGLRGERDLGRLSVQALPGDAGGPVLDNSGRVLGMLLPRIDSARQLPED
CCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEECCCCCEEEHHHHCCCHHHCCHHH
VRFALIGQAIEPVMAQAGLRPRKGDQTASLDPEDITDLGVGMTVLVSCWE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHEEECC
>Mature Secondary Structure 
TRLVLVLCVWLSGLSGAARAQSESDLVWVQIEARPTYDAALARVQSYAASLPDVAGFSV
HHHHHHHHHHHHCCCCHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEE
AGGWYAVALGPYTPEDAEQVLTTYRQQGLIPNDSYIALGSSYAQQYWPMGVDVLGLGAIG
CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHCCCCCCEEECCCHH
ALSAQAEPEIVPPVRAGEQSAQLQDVITAQDTETPAQARRSESQLTAAQKRELQTALQWA
HCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GVYTAAIDGAFGRGTRNAMAAWQRDNGFEATGVLTTQQRARLLAAYTAILDGLDMRMVRD
HHHEEHHCCCCCCCCHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEC
TEAGLAVKLPTAVVRFQGYEAPFAQYDSVGDFGARVLLISQSGDRDGLAGLYDILQTLTI
CCCCEEEECCCEEEEECCCCCCHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHEE
VPLEGPRSLSRNSFKIVGRGPDFVSETDVRLNGDEIKGFMLIWPLGDDARRDRVLKEMRA
EECCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCEEEEEEECCCHHHHHHHHHHHHH
SFESIPGVLDPGAGIPAAQQIDLFAGLDVRKPTLSRSGFYVDAAGSVVTTAAVVESCARI
HHHHCCCCCCCCCCCCCHHHHHHEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHC
TLDDQFEATLAGVDRERGIALLTPNQSLVPPAFAQFSAQPPRLQSDIAVAGYSFEGQLGA
EECCCHHHHHHCCCHHCCEEEECCCCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCCCC
PSLTFGTLADLKGLRGERDLGRLSVQALPGDAGGPVLDNSGRVLGMLLPRIDSARQLPED
CCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEECCCCCEEEHHHHCCCHHHCCHHH
VRFALIGQAIEPVMAQAGLRPRKGDQTASLDPEDITDLGVGMTVLVSCWE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]