| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is sam [H]
Identifier: 110679205
GI number: 110679205
Start: 1827351
End: 1828286
Strand: Reverse
Name: sam [H]
Synonym: RD1_1916
Alternate gene names: 110679205
Gene position: 1828286-1827351 (Counterclockwise)
Preceding gene: 110679206
Following gene: 110679203
Centisome position: 44.24
GC content: 56.84
Gene sequence:
>936_bases ATGACAATTGACCGACCTTTCCTTGGCATCATGCTGATGCTGGGATTTTGCGTGCTTGCGCCAGTCGGCGATGCAATTGC GAAAATCCTCGGACAAACCGTGCCAATCGGCCAGTTGGTGCTGGTCCGTTTCGCGGTTCAGGCTGTGCTGCTGATTCCAC TGGTCTGGCTCACACATCGGCACTGGCGCATGAGCAAACGCGTGACATGGCTGACTTTCCTGCGCACTATCCTCCATATT CTTGGCATAGGCGCGATGGTTACCGCGTTGAAATACCTGCCCCTTGCGGATGCGATCGCCATTGCCTTCGTGATGCCGTT CATCATGCTCGTGCTGGGTAAATTCGCCCTCGGCGAAGAGGTGGGCGCGCGCCGTATCATTGCCTGCGCCGTGGGGTTTC TTGGCACGTTGCTGGTCGTGCAGCCCAGCTTTGCCCAGGTCGGCTGGCCTGCCCTTTTGCCCGTTGGCGTGGCCATCAAC TTTGCGCTTTTCATGCTGGTTACCCGCCAGATCGCAAAGGAAACCGATCCAATCAGCCTGCAGGCCGTCAGCGGCGTGAT GGCAGTGTTTGTGATCCTACCGATTCTTTTGATCTTTCAAAACAGCAGTTTTCTACAACTCCGGATTGTAAATGTGTCGT CCCATGACTGGGCCTTACTGCTGAGCATTGGCGTCTTGGGGACGGTCGCGCATCTGCTGATGACGTGGTCGCTGCGTTTT GCCCCCTCGGCCACGCTTGCGCCGATGCAATATCTGGAAATACCCTTTGCCACGATCCTCGGCTTTATCGTGTTTGGCGA TTTTCCAAACCCAGTGGCAAGCCTTGGCATCATGATTACGATTGCAGCGGGCCTTTATGTGGTGCTGCGGGAGCGGGCCA TCGCCTTGTCGCTGAAAGCGCCTGCACAACCGGCTGAAGAAACGCGCGCGGCATGA
Upstream 100 bases:
>100_bases GAAACCTCGCTTGGCGGATTGGCGGTAAACGTGCCGAACTGCTGAGCAGGAAAAACAACCTGTGCTTGCAATGCCATTGG GATCGCCTTAGGCTTGATGC
Downstream 100 bases:
>100_bases TGCACAACATCACCGGGGCATCCATTTCAAGCGATACCGGCCCGGTTGCCCGATTTGATGTACCTGTCCGCGCACCGGGC GCAAAATCAATCCCGTCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MTIDRPFLGIMLMLGFCVLAPVGDAIAKILGQTVPIGQLVLVRFAVQAVLLIPLVWLTHRHWRMSKRVTWLTFLRTILHI LGIGAMVTALKYLPLADAIAIAFVMPFIMLVLGKFALGEEVGARRIIACAVGFLGTLLVVQPSFAQVGWPALLPVGVAIN FALFMLVTRQIAKETDPISLQAVSGVMAVFVILPILLIFQNSSFLQLRIVNVSSHDWALLLSIGVLGTVAHLLMTWSLRF APSATLAPMQYLEIPFATILGFIVFGDFPNPVASLGIMITIAAGLYVVLRERAIALSLKAPAQPAEETRAA
Sequences:
>Translated_311_residues MTIDRPFLGIMLMLGFCVLAPVGDAIAKILGQTVPIGQLVLVRFAVQAVLLIPLVWLTHRHWRMSKRVTWLTFLRTILHI LGIGAMVTALKYLPLADAIAIAFVMPFIMLVLGKFALGEEVGARRIIACAVGFLGTLLVVQPSFAQVGWPALLPVGVAIN FALFMLVTRQIAKETDPISLQAVSGVMAVFVILPILLIFQNSSFLQLRIVNVSSHDWALLLSIGVLGTVAHLLMTWSLRF APSATLAPMQYLEIPFATILGFIVFGDFPNPVASLGIMITIAAGLYVVLRERAIALSLKAPAQPAEETRAA >Mature_310_residues TIDRPFLGIMLMLGFCVLAPVGDAIAKILGQTVPIGQLVLVRFAVQAVLLIPLVWLTHRHWRMSKRVTWLTFLRTILHIL GIGAMVTALKYLPLADAIAIAFVMPFIMLVLGKFALGEEVGARRIIACAVGFLGTLLVVQPSFAQVGWPALLPVGVAINF ALFMLVTRQIAKETDPISLQAVSGVMAVFVILPILLIFQNSSFLQLRIVNVSSHDWALLLSIGVLGTVAHLLMTWSLRFA PSATLAPMQYLEIPFATILGFIVFGDFPNPVASLGIMITIAAGLYVVLRERAIALSLKAPAQPAEETRAA
Specific function: Transports S-adenosylmethionine [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 33699; Mature: 33568
Theoretical pI: Translated: 10.45; Mature: 10.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIDRPFLGIMLMLGFCVLAPVGDAIAKILGQTVPIGQLVLVRFAVQAVLLIPLVWLTHR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH HWRMSKRVTWLTFLRTILHILGIGAMVTALKYLPLADAIAIAFVMPFIMLVLGKFALGEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH VGARRIIACAVGFLGTLLVVQPSFAQVGWPALLPVGVAINFALFMLVTRQIAKETDPISL HHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH QAVSGVMAVFVILPILLIFQNSSFLQLRIVNVSSHDWALLLSIGVLGTVAHLLMTWSLRF HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC APSATLAPMQYLEIPFATILGFIVFGDFPNPVASLGIMITIAAGLYVVLRERAIALSLKA CCCCCCCHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECC PAQPAEETRAA CCCCCHHCCCC >Mature Secondary Structure TIDRPFLGIMLMLGFCVLAPVGDAIAKILGQTVPIGQLVLVRFAVQAVLLIPLVWLTHR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH HWRMSKRVTWLTFLRTILHILGIGAMVTALKYLPLADAIAIAFVMPFIMLVLGKFALGEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH VGARRIIACAVGFLGTLLVVQPSFAQVGWPALLPVGVAINFALFMLVTRQIAKETDPISL HHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH QAVSGVMAVFVILPILLIFQNSSFLQLRIVNVSSHDWALLLSIGVLGTVAHLLMTWSLRF HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC APSATLAPMQYLEIPFATILGFIVFGDFPNPVASLGIMITIAAGLYVVLRERAIALSLKA CCCCCCCHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECC PAQPAEETRAA CCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA