| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is nthB [H]
Identifier: 110679198
GI number: 110679198
Start: 1821831
End: 1822505
Strand: Direct
Name: nthB [H]
Synonym: RD1_1909
Alternate gene names: 110679198
Gene position: 1821831-1822505 (Clockwise)
Preceding gene: 110679197
Following gene: 110679199
Centisome position: 44.08
GC content: 62.52
Gene sequence:
>675_bases ATGACACGTCCGCACGACATGGGCGGGCGGTATGGCGACGGCCCTGTCATACCGGAAAATGAGAACCTGCGCTTCAAAGA GGACTGGCATGCGCGTGCCTTGGCCGTGACGCTGGCCTCTGGCAGTCTGGGTCAGTGGAACATCGACATCTCACGGCACG CGCGTGAAAAACTCTCCCCCACGGATTATGCGCGCTTTAGCTATTACGAAAAATGGATAGCCGGGTTGGCCGATTTGCTG GTGCACAGTGGTGTTGTCGATCCACGTGAGTACGCGGGCGCGGACCCGGTGCCAAGCCCTCTGGCGGATCGGGCCTTGCG CGCGCAAGACGTGGACAAAGTGCTTGCAACTGGCGGGCCTGCGGACCGACCGTCGCAGGTTCCACAGCTTTTCAGTGTCG GCGACGCCGTCAAAACGCGAAAGGTTGCGGCGAACTGCCTTGTCGATGGCGGCCACACGCGCTTGCCGCGCTACGCGGCG GGGATGCGGGGCCGCATCGTCCGTTTCCACGGTACGCATGTCTTGCCGGACAGTGCGGCGCATCGGCTTGGCGATGCACC CGAACCGCTTTACGCTGTTGCTTTTCGCGCCGCCGAACTCTGGGCGCATCCTGAGCATCCGGAGGATGAAGTCGTGCTGG ATCTGTGGCAAAGCTATCTGGTGGCGGACGCATGA
Upstream 100 bases:
>100_bases ATGGCACCGACGGATTGGATGAGAAGGCCTTGATGGACCTCGTCACCCGCGACAGCATGATCGGCACGGGCCTCGCGCAC TACCCCGCGGCGGGCACGAC
Downstream 100 bases:
>100_bases CACCGCCGGAACCTGTGTTTTCAGAACCCTGGCACGCGCAGGTTTTCGCCGTCACCGTGCGGTTGAATGAAACGGGCCAT TTGCCTTGGCCCGAGTGGGC
Product: nitrile hydratase, beta subunit
Products: NA
Alternate protein names: NHase; Nitrilase [H]
Number of amino acids: Translated: 224; Mature: 223
Protein sequence:
>224_residues MTRPHDMGGRYGDGPVIPENENLRFKEDWHARALAVTLASGSLGQWNIDISRHAREKLSPTDYARFSYYEKWIAGLADLL VHSGVVDPREYAGADPVPSPLADRALRAQDVDKVLATGGPADRPSQVPQLFSVGDAVKTRKVAANCLVDGGHTRLPRYAA GMRGRIVRFHGTHVLPDSAAHRLGDAPEPLYAVAFRAAELWAHPEHPEDEVVLDLWQSYLVADA
Sequences:
>Translated_224_residues MTRPHDMGGRYGDGPVIPENENLRFKEDWHARALAVTLASGSLGQWNIDISRHAREKLSPTDYARFSYYEKWIAGLADLL VHSGVVDPREYAGADPVPSPLADRALRAQDVDKVLATGGPADRPSQVPQLFSVGDAVKTRKVAANCLVDGGHTRLPRYAA GMRGRIVRFHGTHVLPDSAAHRLGDAPEPLYAVAFRAAELWAHPEHPEDEVVLDLWQSYLVADA >Mature_223_residues TRPHDMGGRYGDGPVIPENENLRFKEDWHARALAVTLASGSLGQWNIDISRHAREKLSPTDYARFSYYEKWIAGLADLLV HSGVVDPREYAGADPVPSPLADRALRAQDVDKVLATGGPADRPSQVPQLFSVGDAVKTRKVAANCLVDGGHTRLPRYAAG MRGRIVRFHGTHVLPDSAAHRLGDAPEPLYAVAFRAAELWAHPEHPEDEVVLDLWQSYLVADA
Specific function: NHase catalyzes the hydration of various nitrile compounds to the corresponding amides [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitrile hydratase subunit beta family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008990 - InterPro: IPR003168 [H]
Pfam domain/function: NA
EC number: =4.2.1.84 [H]
Molecular weight: Translated: 24601; Mature: 24470
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRPHDMGGRYGDGPVIPENENLRFKEDWHARALAVTLASGSLGQWNIDISRHAREKLSP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEECHHHHHHHHCCC TDYARFSYYEKWIAGLADLLVHSGVVDPREYAGADPVPSPLADRALRAQDVDKVLATGGP CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCC ADRPSQVPQLFSVGDAVKTRKVAANCLVDGGHTRLPRYAAGMRGRIVRFHGTHVLPDSAA CCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHCCCCCCEEEEECCEECCCHHH HRLGDAPEPLYAVAFRAAELWAHPEHPEDEVVLDLWQSYLVADA HHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure TRPHDMGGRYGDGPVIPENENLRFKEDWHARALAVTLASGSLGQWNIDISRHAREKLSP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEECHHHHHHHHCCC TDYARFSYYEKWIAGLADLLVHSGVVDPREYAGADPVPSPLADRALRAQDVDKVLATGGP CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCC ADRPSQVPQLFSVGDAVKTRKVAANCLVDGGHTRLPRYAAGMRGRIVRFHGTHVLPDSAA CCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHCCCCCCEEEEECCEECCCHHH HRLGDAPEPLYAVAFRAAELWAHPEHPEDEVVLDLWQSYLVADA HHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9154927 [H]